24 homologs were found in PanDaTox collection
for query gene Vapar_3345 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012791  Vapar_3345  putative sugar ABC transporter, substrate-binding protein  100 
 
 		 373 aa  754    Variovorax paradoxus S110  Bacteria  normal  0.643163  n/a   
 
 
-
 
NC_008786  Veis_2711  putative sugar ABC transporter, substrate-binding protein  80.39 
 
 		 369 aa  610  1e-173  Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  0.210601 
 
 
-
 
NC_011368  Rleg2_4516  putative sugar ABC transporter, substrate-binding protein  60.44 
 
 		 365 aa  444  1.0000000000000001e-124  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.112183  normal  1 
 
 
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NC_012854  Rleg_6409  putative sugar ABC transporter, substrate-binding protein  60.99 
 
 		 365 aa  432  1e-120  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.000000237151  normal  0.403501 
 
 
-
 
NC_011988  Avi_5039  ABC-type sugar transport system, periplasmic component  57.64 
 
 		 364 aa  425  1e-118  Agrobacterium vitis S4  Bacteria  normal  0.797463  n/a   
 
 
-
 
NC_008309  HS_0765  ABC-type sugar-binding periplasmic protein  53.72 
 
 		 369 aa  392  1e-108  Haemophilus somnus 129PT  Bacteria  normal  0.234513  n/a   
 
 
-
 
NC_013421  Pecwa_3887  hypothetical protein  53.06 
 
 		 366 aa  375  1e-103  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_012917  PC1_3690  hypothetical protein  52.77 
 
 		 366 aa  374  1e-102  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009832  Spro_3931  hypothetical protein  51.69 
 
 		 366 aa  374  1e-102  Serratia proteamaculans 568  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009484  Acry_1595  ABC-type sugar transport system periplasmic component-like protein  47.86 
 
 		 368 aa  345  7e-94  Acidiphilium cryptum JF-5  Bacteria  normal  0.32236  n/a   
 
 
-
 
NC_010623  Bphy_5185  putative signal peptide protein  48.24 
 
 		 377 aa  318  7e-86  Burkholderia phymatum STM815  Bacteria  normal  0.296404  normal  0.0737238 
 
 
-
 
NC_003296  RS02363  signal peptide protein  45.38 
 
 		 366 aa  318  7e-86  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  0.0272231 
 
 
-
 
NC_008709  Ping_1312  ABC transporter substrate-binding protein or LacI-type transcriptional regulator  46.65 
 
 		 357 aa  303  4.0000000000000003e-81  Psychromonas ingrahamii 37  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_3830  hypothetical protein  42.6 
 
 		 344 aa  244  1.9999999999999999e-63  Pseudomonas mendocina ymp  Bacteria  normal  0.985949  normal  1 
 
 
-
 
NC_008699  Noca_0679  ABC-type sugar transport system periplasmic component-like  25.45 
 
 		 387 aa  69.7  0.00000000008  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_0604  ABC-type sugar transport system periplasmic component-like  22.61 
 
 		 391 aa  57.4  0.0000004  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_2342  ABC-type sugar transport system periplasmic component-like protein  24.77 
 
 		 378 aa  57.4  0.0000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.759463  normal  0.08592 
 
 
-
 
NC_008699  Noca_0588  ABC-type sugar transport system periplasmic component-like  21.28 
 
 		 390 aa  52.8  0.00001  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_0099  ABC-type sugar transport system periplasmic component-like  23.53 
 
 		 400 aa  51.6  0.00002  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_008541  Arth_1810  ABC-type sugar transport system periplasmic component-like protein  22.43 
 
 		 388 aa  51.6  0.00002  Arthrobacter sp. FB24  Bacteria  normal  0.0233725  n/a   
 
 
-
 
NC_013739  Cwoe_2362  ABC-type sugar transport system periplasmic component-like protein  24.17 
 
 		 380 aa  47.8  0.0003  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  0.0310858 
 
 
-
 
NC_008699  Noca_0806  ABC-type sugar transport system periplasmic component-like  21.55 
 
 		 398 aa  47  0.0006  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_009012  Cthe_0393  sugar ABC transporter (sugar-binding protein)  37.35 
 
 		 321 aa  44.7  0.003  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_008786  Veis_2026  periplasmic binding protein/LacI transcriptional regulator  26.64 
 
 		 320 aa  43.1  0.007  Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  1 
 
 
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