Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3345 |
Symbol | |
ID | 7970583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3524612 |
End bp | 3525733 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644793930 |
Product | putative sugar ABC transporter, substrate-binding protein |
Protein accession | YP_002945229 |
Protein GI | 239816319 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.643163 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAGA AGAGTGTGGT TCCCGCGCGC ACCGTCGCCG CCGCCGTGCT GGCGCTGTGC GCCGCCGCGC TGGCGCCCAA GGCGATGGCC GACGACTTCC TGGATGCCGC GAAGAAGAAG GTCGAGATCG CCACCATGAC CAAGGAGAAG TGGGACGGCC CCACCACCGG CCCCAAGGCC GCCGCGGGCA AGACCATCGT CTTCGTCGCG GGCGACATGA AGAACGGCGG CATCGTGGGC GTGAGCAAGG GCGTGGAGGA AGCGGCGCGC GCCATCGGCT GGACGGTGCG CGTCATCGAC GGCCAGGGCA CGGTCAGCGG GCGCACCGCG GCACTCAACC AGGCGCTGGC CGTGAAGCCC GCGGGCATCG TGGTCGGCGG CTTCGACACC ACCGAGCAGA AGGCGGCGTT CTCGGGCGCG GCCAAGTCGG GCATTCCTCT GGTCGGCTGG CATTCGGGCG AGCAGCCGGG CCCGAACGAC AAGGCGGGCC TCTTCGCCAA CGTGACCACC GTGACAGACG ACGTGGCCGA CGTCGCCGCC TCGTGGGTGG TGGCCGATTC GGGCGGCAAG GCGGGCGTGG TGATCTTCAC CGACTCGCAG TACGCGATTG CGCTCTACAA GGCGCGCGCG ATGGAGGCCG TCATCAAGAA GTGCGGCGGC TGCACCGTGC TGAGCTTCGA GGACAGCCCG ATCTCCGAAA GCTCGACCCG CATGCCGCAG CTCACCACCT CGCTGCTGCA GCGCTTTGGC GACAAGTGGA CGCACTCGCT GGCCATCAAC GACCTGTACT TCGACTTCAT GGGCCCCTCG CTCACCGCGG CGGGCAAGAA GGGCGACGGA TCGCCCAAGG CGGTGTCGGC CGGCGACGGC TCCGAGGCCG CCTACCAGCG CATCCGCACG CAGCGCTACC AGGCCGGCAC GGTGCCCGAG CCGCTCAACA TGCAGGGCTG GCAGATCGTC GACGAGCTCA ACCGCGCCTT CGCCAAGGAG AAGTGGTCGG GCTACGTGCC CAAGGTGCAC CTGGTGACGG CGGGCAACGT GGGCAAGGAC GGCGGGCCGA AGAATGTGTT CGATCCGGAC AACGGCTATC GGACGCAGTA CAAGGCTCTG TGGGGCAAGT AG
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Protein sequence | MKKKSVVPAR TVAAAVLALC AAALAPKAMA DDFLDAAKKK VEIATMTKEK WDGPTTGPKA AAGKTIVFVA GDMKNGGIVG VSKGVEEAAR AIGWTVRVID GQGTVSGRTA ALNQALAVKP AGIVVGGFDT TEQKAAFSGA AKSGIPLVGW HSGEQPGPND KAGLFANVTT VTDDVADVAA SWVVADSGGK AGVVIFTDSQ YAIALYKARA MEAVIKKCGG CTVLSFEDSP ISESSTRMPQ LTTSLLQRFG DKWTHSLAIN DLYFDFMGPS LTAAGKKGDG SPKAVSAGDG SEAAYQRIRT QRYQAGTVPE PLNMQGWQIV DELNRAFAKE KWSGYVPKVH LVTAGNVGKD GGPKNVFDPD NGYRTQYKAL WGK
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