8 homologs were found in PanDaTox collection
for query gene PC1_2205 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012917  PC1_2205  type III secretion regulator YopN/LcrE/InvE/MxiC  100 
 
 		 402 aa  809    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_1892  type III secretion regulator YopN/LcrE/InvE/MxiC  68.84 
 
 		 393 aa  476  1e-133  Dickeya zeae Ech1591  Bacteria  normal  0.545889  n/a   
 
 
-
 
NC_004578  PSPTO_1403  type III secretion protein HrpJ  31.95 
 
 		 368 aa  149  6e-35  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_1216  type III secretion protein HrpJ  30.14 
 
 		 393 aa  144  4e-33  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.508976  normal  1 
 
 
-
 
NC_009439  Pmen_0038  TyeA family type III secretion effector delivery regulator  28.11 
 
 		 385 aa  86.3  0.000000000000001  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011769  DvMF_2419  type III secretion regulator YopN/LcrE/InvE/MxiC  23.63 
 
 		 379 aa  71.2  0.00000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  1 
 
 
-
 
NC_008741  Dvul_3004  type III secretion regulator YopN/LcrE/InvE/MxiC  24.11 
 
 		 374 aa  68.6  0.0000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  0.552336  n/a   
 
 
-
 
NC_008463  PA14_42550  Type III secretion outer membrane protein PopN precursor  25.82 
 
 		 288 aa  46.6  0.0008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>