| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2205 |
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| Symbol | |
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| ID | 8133149 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2534834 |
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| End bp | 2536042 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644865493 |
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| Product | type III secretion regulator YopN/LcrE/InvE/MxiC |
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| Protein accession | YP_003017780 |
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| Protein GI | 253688590 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02511] type III secretion effector delivery regulator, TyeA family
[TIGR02568] type III secretion regulator YopN/LcrE/InvE/MxiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAAAA TGCCGACCGT CCTTCCCTCT AGCAACGCCC TGCCGCGCCC TGTCGTCGTG
GATGACGACC CCGTGCCGCA GGCCGCGGTG CAGCAGACCA GTTCTCACCA CGCGGCTCCC
GGATCGCCGT TATCTACCTC AATGGAAGAG GTAGCGATGG CGTTTGGCGA GCAGGCTGAG
CGGAGAAGTA AATCGCTGAA TCGACGACAA ATCGCCCAGC AGCCAGAGGC TCGCGCCACT
GCGAATGTCG AACGGATTGA GAAGCTGACG GAACTGTTCA GGATGCTGGA AAACCCGTCG
CAAAGTACGC TCGACCAGCA GTTGAGCCGC ATGCGCGATC TGCTGATGCA GAAAGGTTCG
CCGTCGCTTG ACGCCGTTCT GGAAGCCGCA GGCAACGATC CGGCGCGCGG CGATATCCTG
CTGCGCCACA TCCAGCAGCA ATCTGCCCAG CAGCCAGAAC TGGCGACGGC GGCAGAGACT
GCACTACAGC AGTTGCATCA AGAGAAAGGG CCGGAAGTCC GAGCGGGTCT GAATACCGCG
ACGGCCATTG CGTTGTTCAG CACCCAGCCG GAACAGAAAC AGGCGATGCG CGATCTGTAC
TACCAGAAAA TCGTGCATCA GCAATCGGCC AGCGCACTGC TGGACTCTCT TTTGGAACGC
TTTGATGCCG CCACATTCTC CATTGGGCTG CGCACGTTGC AGCGGGCGCT GGCGGCGGAT
ATCGCCTCGC TGACGCCCTC TATTTCGAAA GCCGTTCTTA GCAAAATGCT GAGCAACCTC
AATGATTCCC GCCACCTGAG CCATACGCTG TCATCCAGCC AGACGCTGCT CACGCGTCTG
GCGAATAAAG TGCCAGCCTT TACGCTCGGT GCCGTGGAGC TGACCCGCCG CCTGATTGGC
CTGAGCGCCA ACGGTGCCTA TGCCCGCGAC CTGCATAATC TCGGTCGGGA AGTCGCCGGG
ACGCAGGTAC AGCATCAGGC GATGTTTTTC AGCGCCCTGC TGCCACTCGT CAGCGACCTG
CCGCATCCGC TGTGGCGGGA CAGTAAAAAC CGGCAAACGG CGCTTCAACT GATACGCGGC
ATGATTGGCG ATATCGCCCA ATACGAAAAA CAACAGGCCA GTAATTCTCA GCATAACGAA
CGGGCGCCGC GTGACGCCGC ATCGCCGCAA AAACAGGACG CGCGCGACTC GGATAAGGAG
CAGCCATGA
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| Protein sequence | MIKMPTVLPS SNALPRPVVV DDDPVPQAAV QQTSSHHAAP GSPLSTSMEE VAMAFGEQAE
RRSKSLNRRQ IAQQPEARAT ANVERIEKLT ELFRMLENPS QSTLDQQLSR MRDLLMQKGS
PSLDAVLEAA GNDPARGDIL LRHIQQQSAQ QPELATAAET ALQQLHQEKG PEVRAGLNTA
TAIALFSTQP EQKQAMRDLY YQKIVHQQSA SALLDSLLER FDAATFSIGL RTLQRALAAD
IASLTPSISK AVLSKMLSNL NDSRHLSHTL SSSQTLLTRL ANKVPAFTLG AVELTRRLIG
LSANGAYARD LHNLGREVAG TQVQHQAMFF SALLPLVSDL PHPLWRDSKN RQTALQLIRG
MIGDIAQYEK QQASNSQHNE RAPRDAASPQ KQDARDSDKE QP
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