| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1216 |
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| Symbol | |
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| ID | 3366710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 1373498 |
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| End bp | 1374679 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637651557 |
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| Product | type III secretion protein HrpJ |
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| Protein accession | YP_234308 |
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| Protein GI | 66044467 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02511] type III secretion effector delivery regulator, TyeA family
[TIGR02568] type III secretion regulator YopN/LcrE/InvE/MxiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.508976 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTTC GCCACCAGGG AACCGAACCG GGTCGACGAC CCACTCAGCG GTCACACCAG
GCCCAGAATC GTCCTATGAA AATTGTCGCC CCGCCTACAT TGCCCATTCG TCCGGTAGCG
CCAATCCGCG CCATCACGCC GGCTGCGCGA GCGATTCCCG GCGGCGGGTT GCCTGATGAA
AAAGGCACCT CGTCACTGCA GGTTTCGCGC TTCGCCGCAG CACTGGTGCA GCACAGCCGG
ATCCTGCGTG AGCGAGAACT GATCGCGAGC AGGAACGCGC TGCAGTCGCG GGCCGTCAAG
CTGGGCGAGC TTTATCAGTT GCTGATGAGC GCCAGCGACA CCGGGCTGGA TAACGCCGCC
AGACTGCTGC GCAAAAAACT GCTGCAGGAC AACGACGCCG ATCTGGAACA GGTTCTGGAA
TTCGCTGACG GCGACGCTGC CAAGGCTCAC GTGGTGTTGC AGGCGGCACG TAAACAGGCA
GAAGACGATG GGGCGGAAGC AGAATATGTA GCGCTGACCC AGACGCTTAA ACATCTGCGC
CGCCAATTCG GCCCGCGTAC CCGCGCCGGA ATCAATACCG CAAGAGCCTT CGGGCGCCAG
AACATCGATA ACAAGCGCCG CACTGCCTTA CGCAATCTGT ATGGCGTAGC GGTTTCCGGA
CAACCCAATG TCACGGGCTT GATCGAAGCC TTGATTGGCG AGCAACAGGA ACCCGGCGAG
TTCGACCTGA ACCTGCGCGA CATGCGCATC GCCATCGCCG ACGATCTTTC GGCGATTACC
CCGTCGGCTT CCCATGAACA ACTGCGCACG CTGATGCATG GCCTGACCAC CGCGCGCCAT
GTCACTACGT TGCTGCGCGG CTGCGAACAT CTGCTGGGGC GCATGCGCAA AAAGAATCCC
AAACTGACGG TGGACCCGCC GGCCTTCCTC AAACACATGC TGACCCTGAC GGCCAATGGC
ATGAATGTTA ATCAGACCTT GCAACTGACC CAGCACATCG GGGGCAACAG GCTCGAACAC
CAGCTGGCCT TTCTCAATGG CCTGCGGCCG ATGCTGATGC AGTTGCCGAT CCTGCTCTGG
CGGGACCTGA AAAGCCGCCA GGCCGCGCTG AATAATCTAC TCACGCTGAT GGCCGAGCTT
ACGCAGAAGG AACAGAAGCA ACTATACGAG GGGCTTGCCT GA
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| Protein sequence | MSLRHQGTEP GRRPTQRSHQ AQNRPMKIVA PPTLPIRPVA PIRAITPAAR AIPGGGLPDE
KGTSSLQVSR FAAALVQHSR ILRERELIAS RNALQSRAVK LGELYQLLMS ASDTGLDNAA
RLLRKKLLQD NDADLEQVLE FADGDAAKAH VVLQAARKQA EDDGAEAEYV ALTQTLKHLR
RQFGPRTRAG INTARAFGRQ NIDNKRRTAL RNLYGVAVSG QPNVTGLIEA LIGEQQEPGE
FDLNLRDMRI AIADDLSAIT PSASHEQLRT LMHGLTTARH VTTLLRGCEH LLGRMRKKNP
KLTVDPPAFL KHMLTLTANG MNVNQTLQLT QHIGGNRLEH QLAFLNGLRP MLMQLPILLW
RDLKSRQAAL NNLLTLMAEL TQKEQKQLYE GLA
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