Gene Pmen_0038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0038 
Symbol 
ID5106712 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp36171 
End bp37328 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content62% 
IMG OID640501254 
ProductTyeA family type III secretion effector delivery regulator 
Protein accessionYP_001185544 
Protein GI146305079 
COG category 
COG ID 
TIGRFAM ID[TIGR02511] type III secretion effector delivery regulator, TyeA family
[TIGR02568] type III secretion regulator YopN/LcrE/InvE/MxiC 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAGAC CTATCCCCAA CGCCAGCTCG ATCCTGCACA TACCGTCTGT CGCCCGTGCA 
GCATCCCCTG CCACTCCCCT TGCGCAGGTT CGGTCAGGTG CTGCGACCAC CACTGGCACG
AGTGCCCAGC AAGCCTCGAA ATTCGCCGCC GCGCTGGTAC AGAACAGCCG CGAGTTGGGG
CGTCGTGATC TGTTCGCCAA GATCAATGCT CTGCAATCCC AGGCAAGCAA GCAGCATGAG
TTGGCCCACC TGCTGCTGGC GACCCATGAA CGGGGCATGG AGGAGTCGGC TCGTGCACTG
CGCAAGACGC TGAAGAACGG CCAACTGCTG CGAATGGAGC GGGGCAAGCT GCTCAAGCAG
ATCGTCGACA GCATGGCGGG CGATGCAGCC AAGGCCCATG CCCTGTTGCA GGCGGCGGCT
CGACAGGCCA AGGGCGAGAA GTCGCTCAAT GAACAGCAGG CGCTGAATCA GCAACTCCAG
CTCTTGCGGC AACAGCATGG GCGCAATCCC CGGCCTCTGT TCAATACGGG TAACAACACC
AGGATCCTGG CGCGCGGAGG CGAGGATCCT CAGCGGCGAG ACAAGCTGCG CAGCCTCTAC
AGCGTTGCGG TGACCGAACA GCTGAACGTG GTCGGGCTGA TCGAGGCTCT GCTGAATAGC
ACCCAGGACG ATGGGCAGAA GGATGGCCGC GAAGGCTTCG AAGCCGTCCT GCGCGAGATC
CGCCAGGTCG TGGCGCGCGA CATGGCGGAA CTCGATGGCA GCGCATCACC ACAGAAACTG
CGAACCATGA TGTACGCCAT GAGTACGGCG CAGTACGTGG CAACCCTGTT CGGTGGCTGC
GAACACCTGC TGGGCCGCAT GCGCAACAAG AATCCCGCCA TGCAGGTTGA GACCTCGGCG
TTTCTCAAGA ACCTGCTGGG GCTGATCGGC AAGGGCATGG CGCTGAACGA CACCCTTCAG
CTGACGCAGC AGATCGGCGG TCGGCAACTC AAGCACCAGC TGGCGTTCCT CAACGGGCTG
CGCCCGATGC TGCATCAGCT GCCAATCATG CTATGGCGCG ACATCAAGAG CCGACAGAAC
GCGCTGGGTA ATCTGCTCTC GCTGATGGCG GCGTTGACCA GTGAAGAGCA GAAGCGCCTC
AAGGAGGGCA TCGCCTGA
 
Protein sequence
MIRPIPNASS ILHIPSVARA ASPATPLAQV RSGAATTTGT SAQQASKFAA ALVQNSRELG 
RRDLFAKINA LQSQASKQHE LAHLLLATHE RGMEESARAL RKTLKNGQLL RMERGKLLKQ
IVDSMAGDAA KAHALLQAAA RQAKGEKSLN EQQALNQQLQ LLRQQHGRNP RPLFNTGNNT
RILARGGEDP QRRDKLRSLY SVAVTEQLNV VGLIEALLNS TQDDGQKDGR EGFEAVLREI
RQVVARDMAE LDGSASPQKL RTMMYAMSTA QYVATLFGGC EHLLGRMRNK NPAMQVETSA
FLKNLLGLIG KGMALNDTLQ LTQQIGGRQL KHQLAFLNGL RPMLHQLPIM LWRDIKSRQN
ALGNLLSLMA ALTSEEQKRL KEGIA