Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0038 |
Symbol | |
ID | 5106712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 36171 |
End bp | 37328 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640501254 |
Product | TyeA family type III secretion effector delivery regulator |
Protein accession | YP_001185544 |
Protein GI | 146305079 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02511] type III secretion effector delivery regulator, TyeA family [TIGR02568] type III secretion regulator YopN/LcrE/InvE/MxiC |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCAGAC CTATCCCCAA CGCCAGCTCG ATCCTGCACA TACCGTCTGT CGCCCGTGCA GCATCCCCTG CCACTCCCCT TGCGCAGGTT CGGTCAGGTG CTGCGACCAC CACTGGCACG AGTGCCCAGC AAGCCTCGAA ATTCGCCGCC GCGCTGGTAC AGAACAGCCG CGAGTTGGGG CGTCGTGATC TGTTCGCCAA GATCAATGCT CTGCAATCCC AGGCAAGCAA GCAGCATGAG TTGGCCCACC TGCTGCTGGC GACCCATGAA CGGGGCATGG AGGAGTCGGC TCGTGCACTG CGCAAGACGC TGAAGAACGG CCAACTGCTG CGAATGGAGC GGGGCAAGCT GCTCAAGCAG ATCGTCGACA GCATGGCGGG CGATGCAGCC AAGGCCCATG CCCTGTTGCA GGCGGCGGCT CGACAGGCCA AGGGCGAGAA GTCGCTCAAT GAACAGCAGG CGCTGAATCA GCAACTCCAG CTCTTGCGGC AACAGCATGG GCGCAATCCC CGGCCTCTGT TCAATACGGG TAACAACACC AGGATCCTGG CGCGCGGAGG CGAGGATCCT CAGCGGCGAG ACAAGCTGCG CAGCCTCTAC AGCGTTGCGG TGACCGAACA GCTGAACGTG GTCGGGCTGA TCGAGGCTCT GCTGAATAGC ACCCAGGACG ATGGGCAGAA GGATGGCCGC GAAGGCTTCG AAGCCGTCCT GCGCGAGATC CGCCAGGTCG TGGCGCGCGA CATGGCGGAA CTCGATGGCA GCGCATCACC ACAGAAACTG CGAACCATGA TGTACGCCAT GAGTACGGCG CAGTACGTGG CAACCCTGTT CGGTGGCTGC GAACACCTGC TGGGCCGCAT GCGCAACAAG AATCCCGCCA TGCAGGTTGA GACCTCGGCG TTTCTCAAGA ACCTGCTGGG GCTGATCGGC AAGGGCATGG CGCTGAACGA CACCCTTCAG CTGACGCAGC AGATCGGCGG TCGGCAACTC AAGCACCAGC TGGCGTTCCT CAACGGGCTG CGCCCGATGC TGCATCAGCT GCCAATCATG CTATGGCGCG ACATCAAGAG CCGACAGAAC GCGCTGGGTA ATCTGCTCTC GCTGATGGCG GCGTTGACCA GTGAAGAGCA GAAGCGCCTC AAGGAGGGCA TCGCCTGA
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Protein sequence | MIRPIPNASS ILHIPSVARA ASPATPLAQV RSGAATTTGT SAQQASKFAA ALVQNSRELG RRDLFAKINA LQSQASKQHE LAHLLLATHE RGMEESARAL RKTLKNGQLL RMERGKLLKQ IVDSMAGDAA KAHALLQAAA RQAKGEKSLN EQQALNQQLQ LLRQQHGRNP RPLFNTGNNT RILARGGEDP QRRDKLRSLY SVAVTEQLNV VGLIEALLNS TQDDGQKDGR EGFEAVLREI RQVVARDMAE LDGSASPQKL RTMMYAMSTA QYVATLFGGC EHLLGRMRNK NPAMQVETSA FLKNLLGLIG KGMALNDTLQ LTQQIGGRQL KHQLAFLNGL RPMLHQLPIM LWRDIKSRQN ALGNLLSLMA ALTSEEQKRL KEGIA
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