| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1403 |
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| Symbol | hrpJ |
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| ID | 1183039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1541488 |
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| End bp | 1542594 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637392775 |
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| Product | type III secretion protein HrpJ |
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| Protein accession | NP_791230 |
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| Protein GI | 28868611 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02511] type III secretion effector delivery regulator, TyeA family
[TIGR02568] type III secretion regulator YopN/LcrE/InvE/MxiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATCG TCGCTCCGCC TATCATGCGA ATACTTCCGG TCGCGCCGAC CCGCGTCGTG
ACGCCTGCTG CGCAGCCACT TCCCAATGCT GATCTGCACA ATTCAGGGAC TTCGCCACAA
CAGGTTTCGC GCTTCGCGGC CGCGCTCATC CAGCACAGAC GCATCCTCAT TCAGCGCGAC
CTGATCGCCA GCAACAATGC CTTGCAGTCG CGAGCGGTGA AGCTCGGTGA GCTTTATCAA
CTGCTGATGA CCGATCAGGA CACCGGGCTG GATAACGCGG CCAGGGTATT GCGCAAAAAG
CTCATGCAGG ATGACTCTTC CTCAGATCTG AAACAGGTTC TGGATTACAC CGACGGTGAT
GCCGCCAAGG CTCATGTGGT GTTGCAAGCC GCCAGGAAGC AGGCCGAAGC CGACGGTGAG
ATGGGCGAGC ATGTGGTCCT GACACAGCAG CTCAAACAGC TGCGTCGCAA GTACGGTCCA
CGTGCTCGCG CCGGGATCAA CAGCGCCAAG GCATTCGCGC GGCCAAATAT CGATAACAAG
CGTCGAGTCG CCCTGCGCAA CCTCTATAGC GTGGCGGTTT CCGGCCAGCC AAACATTACC
GGCCTGATCG AAGCATTGCT CGGCGAGCAG CAAGAAGCCG GGCAATTCAA CATTGACCTG
CGCGATATGC GCACCGCGAT CGCCGACGAC CTGTCCGCGA TGACGCCGTC AGCTTCTCAC
GAGCAACTGC GCACACTGAT GCACGGCCTC AACACGGCAC GCCACGTGAC CACGCTGCTG
AAAGGTTGCG AGCACCTGCT GGGCCGTATG CGCAACAAGA ACCCCGACCT GACGGTCGAC
CCGCCAGCCT TTCTCAAGCA CTTGCTGACC CTGACGGCCA ATGGAATGAA TGTGAACCAG
ACCCTGCAAC TGACTCAACA CATTGGTGGC AAGCAGCTCA AGCACCAATT GGCGTTCCTC
AACGGGTTGC GCCCCATGCT GCTGCAACTG CCGATCCTGC TCTGGCGCGA CATGAAAAGC
CGCCAGACCG CACTGAGCAA CCTGCTCATC CTGATGGCTG AACTCACCAC TCAGGAACAA
AAGCAGCTCT ACGGGGGGCT CGTCTGA
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| Protein sequence | MKIVAPPIMR ILPVAPTRVV TPAAQPLPNA DLHNSGTSPQ QVSRFAAALI QHRRILIQRD
LIASNNALQS RAVKLGELYQ LLMTDQDTGL DNAARVLRKK LMQDDSSSDL KQVLDYTDGD
AAKAHVVLQA ARKQAEADGE MGEHVVLTQQ LKQLRRKYGP RARAGINSAK AFARPNIDNK
RRVALRNLYS VAVSGQPNIT GLIEALLGEQ QEAGQFNIDL RDMRTAIADD LSAMTPSASH
EQLRTLMHGL NTARHVTTLL KGCEHLLGRM RNKNPDLTVD PPAFLKHLLT LTANGMNVNQ
TLQLTQHIGG KQLKHQLAFL NGLRPMLLQL PILLWRDMKS RQTALSNLLI LMAELTTQEQ
KQLYGGLV
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