21 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Nham_0009  CDS  NC_007964  10492  11412  +  921  Pirin-like  YP_575371  decreased coverage  0.00543202  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_0010  CDS  NC_007964  11419  12420  -  1002  PfkB  YP_575372  decreased coverage  0.00317456  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_0436    NC_007964  480173  480671  -  499      decreased coverage  0.00507737  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_0794  CDS  NC_007964  878549  879661  +  1113  hypothetical protein  YP_576132  decreased coverage  0.00331983  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_0795  CDS  NC_007964  879661  880212  +  552  hypothetical protein  YP_576133  decreased coverage  0.00369623  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_1014  CDS  NC_007964  1132864  1133406  +  543  phage tail Collar  YP_576322  decreased coverage  0.00907435  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_1449  CDS  NC_007964  1637015  1639342  -  2328  periplasmic sensor signal transduction histidine kinase  YP_576731  decreased coverage  0.00109411  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_1495  CDS  NC_007964  1698392  1699165  +  774  MotA/TolQ/ExbB proton channel  YP_576777  decreased coverage  0.00626739  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_2155  CDS  NC_007964  2393624  2395711  -  2088  virulence-associated E  YP_577410  decreased coverage  0.00489763  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_2196  CDS  NC_007964  2443239  2444519  -  1281  LolC/E family lipoprotein releasing system, transmembrane protein  YP_577448  decreased coverage  0.00714902  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_2419  CDS  NC_007964  2680693  2681031  -  339  hypothetical protein  YP_577669  decreased coverage  0.00161449  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_2671  CDS  NC_007964  2936219  2937403  -  1185  peptidase M20D, amidohydrolase  YP_577910  decreased coverage  0.00976662  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_2679  CDS  NC_007964  2945883  2946827  +  945  4-hydroxy-3-methylbut-2-enyl diphosphate reductase  YP_577918  decreased coverage  0.00132891  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_2907  CDS  NC_007964  3198102  3199361  -  1260  lytic murein transglycosylase  YP_578135  decreased coverage  0.00384292  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_2908  CDS  NC_007964  3199364  3199957  -  594  hypothetical protein  YP_578136  decreased coverage  0.00873066  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_3214  CDS  NC_007964  3540242  3541108  -  867  methyltransferase small  YP_578409  decreased coverage  0.0042849  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_3763  CDS  NC_007964  4142067  4142333  -  267  hypothetical protein  YP_578946  decreased coverage  0.00336067  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_3810  CDS  NC_007964  4188442  4188774  +  333  hypothetical protein  YP_578980  decreased coverage  0.00534392  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_3833  CDS  NC_007964  4209642  4210931  +  1290  hypothetical protein  YP_578996  decreased coverage  0.00500542  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_4198  CDS  NC_007959  157592  159367  +  1776  ABC transporter related  YP_571653  decreased coverage  0.00760523  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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Nham_4483  CDS  NC_007960  128906  129832  +  927  ArdC gene in pSa(IncW plasmid)-like  YP_571897  decreased coverage  0.00889579  n/a    Nitrobacter hamburgensis X14  Bacteria 
 
 
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