| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_2155 |
|---|
| Symbol | |
|---|
| ID | 4030224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | - |
|---|
| Start bp | 2393624 |
|---|
| End bp | 2395711 |
|---|
| Gene Length | 2088 bp |
|---|
| Protein Length | 695 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637970613 |
|---|
| Product | virulence-associated E |
|---|
| Protein accession | YP_577410 |
|---|
| Protein GI | 92117681 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5545] Predicted P-loop ATPase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00489763 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTAG AAATCTCAAG TGATTTTGAC TATTATGCGT CAATCGGCGC GGCTCTTGCT
CCTATTCCCC ATGGCGCGAA AAATCCTCTC GGCATCGTGG GAAGTGTTTA TCTCGACTGC
TCCAAAGACC CAGCACAATG GCGCGGCTGG CGCGCGACGC ATCCAAACTG CAATTTTGTT
CTTGTGGCCG GGCCGTCGCG GCTCATCATA CTCGACATCG ACGTGAAAGA GCTTGGCGTC
GACCGTGCCA TCCATCTTTA CCGCTGGTGG TTCGAGTCGC GCAGACTTCC GATCCTAATG
CCGCAGGTCA GAACGCCGTC TGGTGGATTC CACACATACG TTCGGGTGCC GGATGGCGTT
GATCTGGAAG ACCTGACCGC CGCTCAACTT GTGCCCGCGT GCGAAGGCGC GAAGAAGGCG
ATCGTGGAGA CCAAGATCGG CAACGGTATC ACAAACGCAG TCGGCTCTTA TTACGACGGC
CGCGACGGCG GCCCGGCGGG CTATTACAAG CGCATCACAC CTTACGAGCC GCACGAGTGC
CTGCCGCAAC TTCTAGAGTA TTACAAGCGC AAGGTTGTGG CGACCGCGGC AACGCCGGAA
TCCACGCGCG CCGCGGAGGA ACTATTACCG ACGTTGCCGG CGCATATTCG TCGCAAACTC
GATTGCGAGG ACGCCACCGG CGACCGCAGC GCGGACATAG CTCGTTGCAC GACGGCCTTA
ATCGGCCACG GATGCAGCGA TGCGGAAATC TTCGATCTAA TCTGGAGTCA TCCGCTCGGC
GAAAAGGCGC GGGAAAAGAA GGATGACGGG CACTGGCTGC GCAAGGACAT CACCAGTATG
CGCAGCAAGG GATTTGGCGA GCGCAAGCCG GTAGACTGGA GCGGCGTAGC TATGACCGGC
GCGAAGACTG GCGATATCGT CAGCCGTCCC GATTGGCATC ACCAGTGCAT TGCAGACGGC
AACGGCAAGA TCATTCCCAA CGTCGCGAAC GCCATCGTCG CGGTGACAGC AGCATCCGGA
TCGCACATCG GATTTAACGA AATGGAGTGC GCTCCGTTCT GGCTCGCTCC GTACAACCGG
GCAATCCGAG ACGAGGAGGT CACCGAAATC CAGAAGTGGA TTCAGCACAA CGGAATTCCG
CGCATCGGGA AGGATATTGT CCACGATGCT GTGCGTTCGG TAGCGGTCAA GAATAGCTTT
CACCCTGTGC GCGATTACCT GAACGCGCTG CGATGGGACG GCGTGCCGCG CGCTGGTAAC
TGGTTGTCGA CATATCTCGG CGCGACGCGA ACACCTTACA CGAACGGCAT CGGGCAAATG
TTCCTTATCG CCATGGTGGC GCGTGCGTTC CAGCCGGGAT GCAAGGCGGA CTACATGCTG
ATTTTGGAGG GCAAGCAGGG GCTTATGAAG TCGAGCGCCT GCCGTGCCCT CGCGGGACAA
TGGTTTTCCG ATCAACTGCC CGACATCGGA ACAAAGGACG CGGCGCAGCA CTTGCGCGGC
AAATGGCTGA TCGAGGCCGC GGAGATGCAC GCGTTGTCGC GCGCGGAAAC GACGGCGCTC
AAGGCATTTG TGACGCGGCA GGAGGAACGC TATCGCCCGC CGTACGGCCG CCTTGAGGTC
GTCGAGCCGC GCCAGTGCGT TTTTATCGGG ACAACGAACA AAGCCGTCTA TCTGAAAGAC
GAAACGGGTG GACGGCGGTT CTGGCCGGTG AAGTGCGGGA CCATTGCCAT AGATCGCTTG
GCGGCTGATC GCGACCAACT ATTCGCTGAG GCTGTGCATC TTTACCGGAG CGGCGCCGCG
TGGTGGCCGG ATCGTGAGTT TGAGGCGGAG CATATTGCGC CCGAACAAGA GAGGCGATTC
GAGCATGACG ATTGGTCCCA GCCGATTTCA GAGTACCTGA AAGACAAGCA GTCGGTAACG
CTGATCGATG TGGCGGCCGG GGCGCTCCAT GTACGGCGCG AGGATTTCTC GCGAAGCGAC
CAACTGCGGA TTACGGCTAT CCTTGAAAAA GTGGGTTGGG AACGTGGCAT CCCTGAGCAC
GGCAGGCGGC CTTGGGTGCG GACACAAAGG GAAAGCGTGG CGGCGTAA
|
|---|
| Protein sequence | MSLEISSDFD YYASIGAALA PIPHGAKNPL GIVGSVYLDC SKDPAQWRGW RATHPNCNFV
LVAGPSRLII LDIDVKELGV DRAIHLYRWW FESRRLPILM PQVRTPSGGF HTYVRVPDGV
DLEDLTAAQL VPACEGAKKA IVETKIGNGI TNAVGSYYDG RDGGPAGYYK RITPYEPHEC
LPQLLEYYKR KVVATAATPE STRAAEELLP TLPAHIRRKL DCEDATGDRS ADIARCTTAL
IGHGCSDAEI FDLIWSHPLG EKAREKKDDG HWLRKDITSM RSKGFGERKP VDWSGVAMTG
AKTGDIVSRP DWHHQCIADG NGKIIPNVAN AIVAVTAASG SHIGFNEMEC APFWLAPYNR
AIRDEEVTEI QKWIQHNGIP RIGKDIVHDA VRSVAVKNSF HPVRDYLNAL RWDGVPRAGN
WLSTYLGATR TPYTNGIGQM FLIAMVARAF QPGCKADYML ILEGKQGLMK SSACRALAGQ
WFSDQLPDIG TKDAAQHLRG KWLIEAAEMH ALSRAETTAL KAFVTRQEER YRPPYGRLEV
VEPRQCVFIG TTNKAVYLKD ETGGRRFWPV KCGTIAIDRL AADRDQLFAE AVHLYRSGAA
WWPDREFEAE HIAPEQERRF EHDDWSQPIS EYLKDKQSVT LIDVAAGALH VRREDFSRSD
QLRITAILEK VGWERGIPEH GRRPWVRTQR ESVAA
|
|---|
| |