Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Nham_2679 |
Symbol | ispH |
ID | 4032453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrobacter hamburgensis X14 |
Kingdom | Bacteria |
Replicon accession | NC_007964 |
Strand | + |
Start bp | 2945883 |
End bp | 2946827 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637971131 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_577918 |
Protein GI | 92118189 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00132891 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGACTGACG CTCGTCCGAT TGAAGTTCTC CTAGCGCAGC CGCGTGGATT CTGCGCGGGC GTCGTCCGCG CGATCGAGAT CGTCGAGTGC GCGCTGGAGA AGTATGGCCC CCCGGTGTAC GTCCGCCACG AGATCGTTCA CAACAAGTAC GTCGTCGAAA GCCTGAAGAA CAAGGGCGCG ATCTTCGTCG AGGATCTGTC CGAGGTTCCG CCTAAGGCCG TCACCGTGTT CAGCGCCCAC GGCGTTGCGC GGAGCGTGGA AGAAGAGGCT GCCGCACGCG GTTTGCCCGT GCTCAACGCC ACCTGCCCGT TGGTGACAAA GGTTCACAAT CAGGGCAAAC GCTACAAGTC CAAGGGACGG ACCCTGATCC TGATCGGCCA CGCCGGCCAT CCCGAGGTTG AAGGAACCAT GGGACAGGTT CCGGGCCCTG TCCTGCTGGT CCAGGATGTC GACGACGTCG CGGCCCTGAC GCTGCACGCC GACACCCCGG TCGCCTATAT CACCCAGACG ACACTCAGCG TCGACGACAC CAAGGACATC ATTCTCGCGC TCCAGCAGCG TTTCACCGAT ATCCAGGGCC CTGACACACG GGATATCTGC TATGCAACAC AAAATCGGCA ATCTGCGGTA AGAGACCTCA GCAAGCTGGT GGATGTCATC CTCGTAGTCG GAGCAGCCAA TAGTTCAAAC TCGAACCGGC TGCGCGAAAT TGGGACTGAA GTCGGCGTTG CAAGTTATCT CATCGCCGAC GGCAGCGAAC TCAATGCTGA ATGGCTTAGA GATGCGAAAA CCGTGGGCAT CACGGCCGGC GCATCGGCGC CGGAGGTGCT TGTCGATGAT GTCATCGAGG CCTTGAGACG CATCGGTCCG GTTGCTGTTT CGGTGCTGCC GGGACGGGAA GAAAACATCG AATTCCGCCT TCCGTCTGAA CTGACCCCAG CCTGA
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Protein sequence | MTDARPIEVL LAQPRGFCAG VVRAIEIVEC ALEKYGPPVY VRHEIVHNKY VVESLKNKGA IFVEDLSEVP PKAVTVFSAH GVARSVEEEA AARGLPVLNA TCPLVTKVHN QGKRYKSKGR TLILIGHAGH PEVEGTMGQV PGPVLLVQDV DDVAALTLHA DTPVAYITQT TLSVDDTKDI ILALQQRFTD IQGPDTRDIC YATQNRQSAV RDLSKLVDVI LVVGAANSSN SNRLREIGTE VGVASYLIAD GSELNAEWLR DAKTVGITAG ASAPEVLVDD VIEALRRIGP VAVSVLPGRE ENIEFRLPSE LTPA
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