16 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Pden_2947  CDS  NC_008687  115042  116349  -  1308  hypothetical protein  YP_916727  decreased coverage  0.00388563  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_2996  CDS  NC_008687  170234  170545  +  312  methanol dehydrogenase, beta subunit  YP_916775  decreased coverage  0.0052543  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_3297  CDS  NC_008687  462189  464129  -  1941  heavy metal translocating P-type ATPase  YP_917071  decreased coverage  0.00745206  normal  0.534464  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_3554  CDS  NC_008687  702466  704322  -  1857  hypothetical protein  YP_917320  decreased coverage  0.00291608  normal  0.487552  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_3626  CDS  NC_008687  778453  778971  -  519  AsnC family transcriptional regulator  YP_917389  decreased coverage  0.00949051  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_3644  CDS  NC_008687  794966  795748  -  783  hypothetical protein  YP_917407  decreased coverage  0.00251577  normal  0.378344  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_3672  CDS  NC_008687  821309  822499  -  1191  hypothetical protein  YP_917435  decreased coverage  0.00326083  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_3737  CDS  NC_008687  880555  880806  -  252  hypothetical protein  YP_917500  decreased coverage  0.00728994  normal  0.292015  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_3738  CDS  NC_008687  880905  881876  -  972  Fis family transcriptional regulator  YP_917501  decreased coverage  0.00315119  normal  0.324352  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_3775  CDS  NC_008687  912308  913123  +  816  hypothetical protein  YP_917537  decreased coverage  0.000000000361227  hitchhiker  0.000220505  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_3964  CDS  NC_008687  1102409  1103935  +  1527  cysteine desulfurase activator complex subunit SufB  YP_917726  decreased coverage  0.00244471  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_4118  CDS  NC_008687  1270064  1271038  +  975  LysR family transcriptional regulator  YP_917878  decreased coverage  0.00686854  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_4182  CDS  NC_008687  1339157  1339621  -  465  7-cyano-7-deazaguanine reductase  YP_917942  decreased coverage  0.0000104861  normal  0.570077  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_4402  CDS  NC_008687  1598266  1599774  -  1509  hypothetical protein  YP_918162  decreased coverage  0.00944962  normal  0.211367  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_4442  CDS  NC_008687  1650089  1651366  -  1278  extracellular solute-binding protein  YP_918202  decreased coverage  0.00539632  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_r2  rRNA  NC_008687  144166  146983  +  2818  23S ribosomal RNA    decreased coverage  0.00999234  normal  0.528087  Paracoccus denitrificans PD1222  Bacteria 
 
 
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