Gene Pden_4402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4402 
Symbol 
ID4582952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1598266 
End bp1599774 
Gene Length1509 bp 
Protein Length502 aa 
Translation table11 
GC content66% 
IMG OID639771709 
Producthypothetical protein 
Protein accessionYP_918162 
Protein GI119387107 
COG category[S] Function unknown 
COG ID[COG3333] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00944962 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.211367 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACTGC TCAGCAATCT CGCGCTTGGC TTCTCGGTCG CCTCGTCGCT GGCGAACCTG 
CTCTTCTGCC TGATCGGCGT GCTTCTGGGC ACGCTGATCG GGGTGCTGCC GGGGATCGGC
GCCACGGCGA CCATCGCCAT GCTCTTGCCG ATCACCTTCC AGCTCGAGCC GGTCAGCTCG
CTCATCATGC TGGCGGGGAT CTATTACGGC GCGCAATACG GCGGCTCGAC CACCGCGATC
CTGATCAACA TGCCGGGCGA AAGCTCGTCC GCCGTCACCG CCATCGACGG CTACCAGATG
GCGCGCAAGG GCCGCGCGGG CACGGCGCTG GCCACGGCGG CGCTGGGGTC GTTCTTTGCC
GGCACCGTCG CGACCTTCCT GGTCGCGATC TTTGCCCCGC CCCTGACCGC GGTGGCGCTG
AAATTCGGCG CGGCCGAGTA TTTCAGCCTG ATGGTCATGG GCCTGGTCAT GTCGGTGGCG
CTGGCGCATG GCTCGGTCCT CAAGGCGCTG GCCATGGTGG TGCTGGGCCT GCTTCTGGGC
ATCGTCGGCA CCGACATCTA TACCGGCGCG CCGCGTTTCA CCCTGGGCAT CACCCAATAT
GCCGACGGGC TGAACTTCGT CGCCGTCGCC GTGGGCGTCT TCGGCATCGC CGAGATCCTG
CGCAACCTCG AGGACGAGCA CGACCGCGAG GTGATGACCA AGAACATCAG CCGCCTGTTC
CCCAACCGCG AGGAATTCAG GCAGATGATC GGCCCGGTCC TGCGCGGCAC CGGGGTCGGC
TCGGTCCTGG GCATCCTGCC GGGCGGGGGC GCGATCCTGG CCAGCTTTGC CTCGTACACG
ATCGAGAAGA AGGTCTCTGC CCGGCCGCAG GACTTCGGCA AGGGTGCGCT GGCCGGCGTC
GCCGGCCCGG AAAGCGCCAA CAATGCCGGG GCGCAGACCT CGTTCATCCC GCTGCTGACG
CTGGGCATCC CGGCGAACCC GGTCATGGCG CTGATGATCG GCGCGATGAT CATCCAGGGC
ATCGTGCCGG GGCCGAATGT GGTCAGCGAA CAGCCGGCGC TGTTCTGGGG CATCATCGCC
AGCATGTGGA TCGGCAACCT GATGCTGGTG ATCCTGAACC TGCCGCTGAT CGGGCTGTGG
GTCAGGCTGC TGACGGTGCC TTACTATGTG CTGTTCCCGA TCATCATGGC GATGTGCTCG
ATCGGGGTCT ATTCGGTGGC CTCGAACACC TATGACCTCT ATGCCGTCGC CTTCTTCGGG
CTGCTGGGCT ATGTCATGTC CAAGCTGCGC TGCGAGCCGG CGCCCCTGCT GCTGGGCTTT
GTCCTGGGCC CGCTGCTGGA AGAGAACCTG CGCCGGGCGA TGATCCTGTC GCGGGGCGAT
CCCATGACCT TCCTGACCCG CCCGATCAGC GCCACCCTGC TTTTGATGTC GCTGGCCGTG
CTGGTGCTGG TCTTCCTGCC GCAGATCCGC AAGCGCCGGG ACGAGGTCTT TACCGAAAGC
GATGCGTAA
 
Protein sequence
MELLSNLALG FSVASSLANL LFCLIGVLLG TLIGVLPGIG ATATIAMLLP ITFQLEPVSS 
LIMLAGIYYG AQYGGSTTAI LINMPGESSS AVTAIDGYQM ARKGRAGTAL ATAALGSFFA
GTVATFLVAI FAPPLTAVAL KFGAAEYFSL MVMGLVMSVA LAHGSVLKAL AMVVLGLLLG
IVGTDIYTGA PRFTLGITQY ADGLNFVAVA VGVFGIAEIL RNLEDEHDRE VMTKNISRLF
PNREEFRQMI GPVLRGTGVG SVLGILPGGG AILASFASYT IEKKVSARPQ DFGKGALAGV
AGPESANNAG AQTSFIPLLT LGIPANPVMA LMIGAMIIQG IVPGPNVVSE QPALFWGIIA
SMWIGNLMLV ILNLPLIGLW VRLLTVPYYV LFPIIMAMCS IGVYSVASNT YDLYAVAFFG
LLGYVMSKLR CEPAPLLLGF VLGPLLEENL RRAMILSRGD PMTFLTRPIS ATLLLMSLAV
LVLVFLPQIR KRRDEVFTES DA