Gene Pden_4442 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_4442 
Symbol 
ID4582992 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008687 
Strand
Start bp1650089 
End bp1651366 
Gene Length1278 bp 
Protein Length425 aa 
Translation table11 
GC content66% 
IMG OID639771749 
Productextracellular solute-binding protein 
Protein accessionYP_918202 
Protein GI119387147 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00539632 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGAAAAT TCAGCCGGGG CGCGCTGCGC CCGGTCGCAT TGGCTGCGCT GATGGGCGGC 
ATCGCGCTGC CTGCCGCGGC GGAGGAGCTG TTCTATGTCG CGGGCGGGGT CGGCAAGCAG
GCCGAGCACT TCAAGGACCT TGTGAAGCCC TGGGAGGAGC GCACCGGCCA TACCGTGACG
CTGGTGCCGA TGCCGCAATC CAGTTCGGAC CAGTTCGCGC AATACCGGCT GTGGCTGGCG
GCGGGGACCA AAGACGTCGA CCTGTATCAG ACCGACGTGA TCTGGGCGCC GCAGCTTTCC
GAATATTTCG TCGACCTGTC CGATGCGGCC AAGGATATCG TCGGCGAGCA TTTCCCCTCG
GTCATCGAAA GCCAGACCTC GGACGGCAAG CTGGTGGCGC TGCCGCTTTA TACCGATGCA
CCGGCGCTGT ATTATCGCAC CGACCTGCTG GAGAAATACG GCAAGCAGGT GCCCGGGACC
TGGGCCGAAC TGACCGAGAC CGCCAGGCTG ATCCAGGACG GCGAGCGTGC GGAAGGACAG
GGCGACCTGT GGGGCTTTGT CTGGCAGGGC AATGCCTATG AAGGACTGAC CTGCAACGCG
CTGGAATGGG TGAAATCCTT TGGCGGCGGC CAGATCGTCG AGGCGGACGG CACCGTCTCG
ATCAACAACC CGCAGGCGGT GGCGGCGCTG GAACTGGCGG CAAGCTGGAT CGGCACCATC
AGCCCGCGTG GCGTGCTGGC CCACAAGGAA GAAGAGGCGC GCGGCGTCTG GCAGACCGGC
AACGCGGTCT TCATGCGCAA CTGGCCCTAT GCCTTTGCGC TGAGCGGGGG CGGGGACAGC
GCGGTCAAGG GCAAGTTCGA CGTGGCGCCC CTGCCCGCCG GCACCGAGGA GGCCGGCTCG
GCCGCGACCC TGGGCGGTTG GAACGTCGCG GTGTCGAAAT TCTCGACCAA GCAGGAGGCG
GCGGTCGATC TGGCGCTTTA TCTCGCCTCG GCCGAGGCGC AGAAGCGGCG CGCGCTGCTG
GACGGCAACC TGCCGACCGT GGTCGCGCTT TACGACGATG CCGAGATCGC CGAGGCGGTG
CCGCTGATCC CGCGCTGGAA AGACGTCTTT GCCGATGCGG TCCCGCGCCC CTCGGGGCCG
GTCAAGAGCA AGTATAACGA GATCTCGGCG AAGTTCTGGT CGGCCGTGCA TGACACGCTG
TCGGGCAACG GCACCGCGGC CGAGAACCTG GAGCTTCTGG AGCTGGATCT GACCGATCTG
CAAGGCTCGG GCTGGTAA
 
Protein sequence
MGKFSRGALR PVALAALMGG IALPAAAEEL FYVAGGVGKQ AEHFKDLVKP WEERTGHTVT 
LVPMPQSSSD QFAQYRLWLA AGTKDVDLYQ TDVIWAPQLS EYFVDLSDAA KDIVGEHFPS
VIESQTSDGK LVALPLYTDA PALYYRTDLL EKYGKQVPGT WAELTETARL IQDGERAEGQ
GDLWGFVWQG NAYEGLTCNA LEWVKSFGGG QIVEADGTVS INNPQAVAAL ELAASWIGTI
SPRGVLAHKE EEARGVWQTG NAVFMRNWPY AFALSGGGDS AVKGKFDVAP LPAGTEEAGS
AATLGGWNVA VSKFSTKQEA AVDLALYLAS AEAQKRRALL DGNLPTVVAL YDDAEIAEAV
PLIPRWKDVF ADAVPRPSGP VKSKYNEISA KFWSAVHDTL SGNGTAAENL ELLELDLTDL
QGSGW