| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4442 |
|---|
| Symbol | |
|---|
| ID | 4582992 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008687 |
|---|
| Strand | - |
|---|
| Start bp | 1650089 |
|---|
| End bp | 1651366 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639771749 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_918202 |
|---|
| Protein GI | 119387147 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00539632 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAAT TCAGCCGGGG CGCGCTGCGC CCGGTCGCAT TGGCTGCGCT GATGGGCGGC
ATCGCGCTGC CTGCCGCGGC GGAGGAGCTG TTCTATGTCG CGGGCGGGGT CGGCAAGCAG
GCCGAGCACT TCAAGGACCT TGTGAAGCCC TGGGAGGAGC GCACCGGCCA TACCGTGACG
CTGGTGCCGA TGCCGCAATC CAGTTCGGAC CAGTTCGCGC AATACCGGCT GTGGCTGGCG
GCGGGGACCA AAGACGTCGA CCTGTATCAG ACCGACGTGA TCTGGGCGCC GCAGCTTTCC
GAATATTTCG TCGACCTGTC CGATGCGGCC AAGGATATCG TCGGCGAGCA TTTCCCCTCG
GTCATCGAAA GCCAGACCTC GGACGGCAAG CTGGTGGCGC TGCCGCTTTA TACCGATGCA
CCGGCGCTGT ATTATCGCAC CGACCTGCTG GAGAAATACG GCAAGCAGGT GCCCGGGACC
TGGGCCGAAC TGACCGAGAC CGCCAGGCTG ATCCAGGACG GCGAGCGTGC GGAAGGACAG
GGCGACCTGT GGGGCTTTGT CTGGCAGGGC AATGCCTATG AAGGACTGAC CTGCAACGCG
CTGGAATGGG TGAAATCCTT TGGCGGCGGC CAGATCGTCG AGGCGGACGG CACCGTCTCG
ATCAACAACC CGCAGGCGGT GGCGGCGCTG GAACTGGCGG CAAGCTGGAT CGGCACCATC
AGCCCGCGTG GCGTGCTGGC CCACAAGGAA GAAGAGGCGC GCGGCGTCTG GCAGACCGGC
AACGCGGTCT TCATGCGCAA CTGGCCCTAT GCCTTTGCGC TGAGCGGGGG CGGGGACAGC
GCGGTCAAGG GCAAGTTCGA CGTGGCGCCC CTGCCCGCCG GCACCGAGGA GGCCGGCTCG
GCCGCGACCC TGGGCGGTTG GAACGTCGCG GTGTCGAAAT TCTCGACCAA GCAGGAGGCG
GCGGTCGATC TGGCGCTTTA TCTCGCCTCG GCCGAGGCGC AGAAGCGGCG CGCGCTGCTG
GACGGCAACC TGCCGACCGT GGTCGCGCTT TACGACGATG CCGAGATCGC CGAGGCGGTG
CCGCTGATCC CGCGCTGGAA AGACGTCTTT GCCGATGCGG TCCCGCGCCC CTCGGGGCCG
GTCAAGAGCA AGTATAACGA GATCTCGGCG AAGTTCTGGT CGGCCGTGCA TGACACGCTG
TCGGGCAACG GCACCGCGGC CGAGAACCTG GAGCTTCTGG AGCTGGATCT GACCGATCTG
CAAGGCTCGG GCTGGTAA
|
|---|
| Protein sequence | MGKFSRGALR PVALAALMGG IALPAAAEEL FYVAGGVGKQ AEHFKDLVKP WEERTGHTVT
LVPMPQSSSD QFAQYRLWLA AGTKDVDLYQ TDVIWAPQLS EYFVDLSDAA KDIVGEHFPS
VIESQTSDGK LVALPLYTDA PALYYRTDLL EKYGKQVPGT WAELTETARL IQDGERAEGQ
GDLWGFVWQG NAYEGLTCNA LEWVKSFGGG QIVEADGTVS INNPQAVAAL ELAASWIGTI
SPRGVLAHKE EEARGVWQTG NAVFMRNWPY AFALSGGGDS AVKGKFDVAP LPAGTEEAGS
AATLGGWNVA VSKFSTKQEA AVDLALYLAS AEAQKRRALL DGNLPTVVAL YDDAEIAEAV
PLIPRWKDVF ADAVPRPSGP VKSKYNEISA KFWSAVHDTL SGNGTAAENL ELLELDLTDL
QGSGW
|
|---|
| |