14 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
TM1040_3144  CDS  NC_008043  123368  124948  -  1581  extracellular solute-binding protein  YP_611380  decreased coverage  0.000116165  normal  1  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3151  CDS  NC_008043  131814  132701  -  888  ATPase, BadF/BadG/BcrA/BcrD type  YP_611387  decreased coverage  0.0000102812  normal  1  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3152  CDS  NC_008043  132916  133797  +  882  N-acetylmuramic acid-6-phosphate etherase  YP_611388  decreased coverage  0.00000249376  normal  1  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3221  CDS  NC_008043  218070  218747  +  678  tripartite ATP-independent periplasmic transporter DctQ  YP_611457  decreased coverage  0.000218018  normal  1  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3222  CDS  NC_008043  218740  220140  +  1401  TRAP C4-dicarboxylate transport system permease DctM subunit  YP_611458  decreased coverage  0.00234978  normal  1  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3247  CDS  NC_008043  250042  250839  +  798  integrase catalytic subunit  YP_611483  decreased coverage  0.00558432  normal  1  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3254  CDS  NC_008043  255172  256242  -  1071  TMAO reductase system periplasmic protein TorT  YP_611490  decreased coverage  0.00636832  normal  1  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3312  CDS  NC_008043  321168  322187  +  1020  putative periplasmic solute-binding protein  YP_611546  decreased coverage  0.00706911  normal  1  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3318  CDS  NC_008043  327007  327534  -  528  tripartite ATP-independent periplasmic transporter DctQ  YP_611552  decreased coverage  0.00300706  normal  0.60312  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3573  CDS  NC_008043  613580  614725  +  1146  lytic murein transglycosylase  YP_611804  normal  0.161419  decreased coverage  0.00457991  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3580  CDS  NC_008043  629292  630824  -  1533  hypothetical protein  YP_611811  decreased coverage  0.00103089  normal  0.191716  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3613  CDS  NC_008043  668225  669037  -  813  hypothetical protein  YP_611842  normal  1  decreased coverage  0.00635836  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3619  CDS  NC_008043  675641  676090  +  450  putative thiol-disulphide oxidoreductase DCC  YP_611848  normal  0.204045  decreased coverage  0.00487281  Ruegeria sp. TM1040  Bacteria 
 
 
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TM1040_3620  CDS  NC_008043  676087  677670  +  1584  saccharopine dehydrogenase  YP_611849  normal  1  decreased coverage  0.00695172  Ruegeria sp. TM1040  Bacteria 
 
 
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