Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3221 |
Symbol | |
ID | 4075363 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | + |
Start bp | 218070 |
End bp | 218747 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638004730 |
Product | tripartite ATP-independent periplasmic transporter DctQ |
Protein accession | YP_611457 |
Protein GI | 99078199 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000218018 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGGTT CATCAACCGT GCTCAGCGAT GCCAGCATTT TGTCAAAGCT GGATCGGGCC CTTTTGCCTA TTGAGCGCGT CACAGCAATT CTGAGCGGTC TTGCGGCCTT TTCACTCATG TTCCTGGCCG CATATTCCGT GGCCGGCCGT CAGTTGGATC GGACATTTCT GGCGCCATTT TTCGACAAGA TCGGCCTGAT GGACGGCCCC CTGCCCGGCT ATGTGGATTA TATCGAAGCA CTGATGCCCT TGATCGCCAT CTTGGGCGTC TCCTATGTGC AACGCGAAGG TTCCCACATC CGCATGGACA TCCTCGTGGG GCGGCTAAAG GGTCGCGCGC TTTGGCTTTT TGAATTCATC ACCGTGTTCT GCATGCTGGT GCTGGTGATC GCCTTGGTCT GGGGCTCCTG GGCCCATTTC GACCGTTCGT TTGATTGCGC CCGCCCGCTG TGTTCGCGCG ACAGCTCGAT CGACATCGGC CTGCCGATCT GGCCATCCAA GCTGGTGGTG CCGGTTGCCT TGGCCGTGCT TTCAGCGCGG CTCCTGCTGC AGATGACGGC TTATGCCCGC GCCTTCGTTC TGGGACTCCA GAGCCCTGCG GCCGTACCGC TCATCCAATC CGTCGCCGAG CAAGCCGCTG CTGAGGCGGA GCAACTCAAG GAGGTCGGCA ATGACTGA
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Protein sequence | MAGSSTVLSD ASILSKLDRA LLPIERVTAI LSGLAAFSLM FLAAYSVAGR QLDRTFLAPF FDKIGLMDGP LPGYVDYIEA LMPLIAILGV SYVQREGSHI RMDILVGRLK GRALWLFEFI TVFCMLVLVI ALVWGSWAHF DRSFDCARPL CSRDSSIDIG LPIWPSKLVV PVALAVLSAR LLLQMTAYAR AFVLGLQSPA AVPLIQSVAE QAAAEAEQLK EVGND
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