| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3222 |
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| Symbol | |
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| ID | 4075364 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 218740 |
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| End bp | 220140 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004731 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_611458 |
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| Protein GI | 99078200 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00234978 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGATA TCGAAATCGG CCTCTGGGTC ACCGCCGGAA TGATGGTGCT TGTTGTGCTG
GGCATGCGGG TTGCGTTTGC CGCCGGACTT GCGGGCTTTG TGGGTCTTGT GTGGCTTCGG
TGGAACGGCT TTGACTATAA CCCGGAGCGT TTCTGGAAAG CTGTTGAAAT CAGTGTAAAA
ATTGCGGGCC AAGTACCGCA CTCCAAGGTT TCGAGTCAGG CGCTCAGCCT CATCCCGACC
TTTATTTTAA TTGGATACCT CGCCTACTAC GCCCGCCTCA CCACGGCACT GTTTGAGGCC
GCAAAGCGCT GGGTTGCCTG GGTGCCCGGG GGCCTTGCGG TATCCACCGT TTTTGCCACC
GCAGGGTTTG CCGCCGTTTC GGGCGCATCG GTTGCAACCG CTGCGGTCTT TGCCCGGATC
GGCATCCCGG AAATGCTGGC GGTTGGCTAC AACAAGCGTT TTGCAGCCGG GGTGGTCGCC
GCAGGCGGCA CCCTCGCCTC TCTGATCCCG CCCTCCGCCA TTCTCGTGAT CTATGCAATC
ATTGTGGAGC AGGACGTGGG CAAGCTCTTG CTGGCCGGCT TTGTGCCCGG TGCGTTTTCG
GCCGTGGTCT ATGCGGGCTT GATCATCGCC ATCGCGATGA TCTTCAAGAC GGTCGGCCCA
CCAGTCACGG GCTTCACCTG GCGCGAACGC CTGGTGTCCT TGCCACCTGC CCTGCCGATT
TTTGCGGTTG TCGTGATCAT CATCTTCTTT GTCTACAACC CGTTTGGCGA AGCCTGGGGG
ACACCAACCG AGGGCGGTGC TGTCGGCGCC TTCATCGTCT TTCTCGTCGC GCTAATGCGC
GGGATGCGGA TGCGCGAACT GCTGGATGCG CTGCTTGAGA CTGCCAAACT CACGATTATG
ATCTTCACCA TCATCTGGGG TGTTTTGATC TACGTGCGCT TTCTGGGCTT TGCAGATTTG
CCTTCGGCCT TCGCCGACTG GATCTCGACC CTCTCGGCCT CGCCCATGCT GATCCTAATC
TGTATTCTGC TTGCCTATGC GGTTCTTGGG ATGTTCATGG ACGCCATCGG CATGCTTCTT
CTGACGCTGC CTGTTGTCTA CCCGGCCGTC ATGGCGTTGA ACGGAGGCGA GATGGTCTCG
GCAGCGGATT CTGCCTTCGG CATGTCCGGC CCAATGTGCG CGATCTGGTT TGGCATCCTG
GTGGTCAAGA TGGCGGAGTT CTGTCTGATC ACGCCCCCAA TCGGGCTGAA TTGCTTTGTT
GTAGCGGGGG TACGAGACGA TTTGTCAGTA CAAGACGTGT TCCGCGGCGT GATCCCGTTC
TTCATCGCAG ACGCTGTGAC AATCGCGCTC TTGGTGGCCT TTCCTACCAT TGTCTTGTGG
CTCCCAAGCT TGGCAGGCTA G
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| Protein sequence | MTDIEIGLWV TAGMMVLVVL GMRVAFAAGL AGFVGLVWLR WNGFDYNPER FWKAVEISVK
IAGQVPHSKV SSQALSLIPT FILIGYLAYY ARLTTALFEA AKRWVAWVPG GLAVSTVFAT
AGFAAVSGAS VATAAVFARI GIPEMLAVGY NKRFAAGVVA AGGTLASLIP PSAILVIYAI
IVEQDVGKLL LAGFVPGAFS AVVYAGLIIA IAMIFKTVGP PVTGFTWRER LVSLPPALPI
FAVVVIIIFF VYNPFGEAWG TPTEGGAVGA FIVFLVALMR GMRMRELLDA LLETAKLTIM
IFTIIWGVLI YVRFLGFADL PSAFADWIST LSASPMLILI CILLAYAVLG MFMDAIGMLL
LTLPVVYPAV MALNGGEMVS AADSAFGMSG PMCAIWFGIL VVKMAEFCLI TPPIGLNCFV
VAGVRDDLSV QDVFRGVIPF FIADAVTIAL LVAFPTIVLW LPSLAG
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