| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3254 |
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| Symbol | |
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| ID | 4075396 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 255172 |
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| End bp | 256242 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638004763 |
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| Product | TMAO reductase system periplasmic protein TorT |
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| Protein accession | YP_611490 |
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| Protein GI | 99078232 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02955] TMAO reductase system periplasmic protein TorT |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00636832 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTTT TCCTAAACAC GGCCTCGGCG CTCTTGCTGT CGGTGGCGCT GCCTGCCACG
GCCCAAGAGG CGTGGTTCCC CTATCCTGCC GAAGAGGTCA CACCGGCGTT TTCCGCCGAC
GGCTCGGTTG CCGAGATCAC CTATGAACCC CTCGCCGCCG CCGAGAAGCC TTGGAATATC
TGCGTGTCCT TCCCGCATAT GAAAGATGCC TATTGGCTGG GCGTCGACTA TGGCGTGGTG
GCCGAAGCCG AGCGGCTCGG CGTCAATCTC AATGTGGTGG AGGCGGGCGG CTATACCGAG
CTCAACACCC AGATCAGCCA GATCGAGGAC TGCGTGGCCA GCGGGGCGGA CGCGGTGATC
GTCGGGGCGA TTTCCTATGA CGGCCTGAAC AATGTCATCA GCGAGGTCGC GGGCAAAGGC
ATCCCGGTGA TCGATGTCAT CAACGGTGTG TCCTCCACGG AGATTGCCGC CAAATCACTG
GTCTCGTTTC GCACCATGGG GTTTGAGACC GGCAAATACC TTGCCGAAAA ACATCCCGCA
GGCGCGGATC CTGTGACCGT CGGCTGGTTC CCGGGCCCCG CAGGCGCGGG GTGGGTCGAG
GCCGCCAATA CCGGCTTTAT GGCCGCGGTT GAAGGGTCTG CAGTCAAGGT GTTGGAGCCG
CGCTATGGCG ACACCGGCAA AGAGGCGCAG CTCAAACTCG TCGAAGACGT GCTGCAGGCC
AATCCCGAGA TCTCGTATAT TGCAGGCACG GCCGTGACCG CAGAAGCGGC GCAGGGCGTG
ATCCGCGAAC GGGGCCTCAA GGGTGAGGTC GACATCCTCG CGTTCTACAT GACGCCGGGG
GTCTACAGTG GCATTCAGCG CGGATTCATT ACCGGTGCGC CTGCGGATTC AATGGTGATT
CAGGGCCGTG TCGCGGTCGA TCAGGCGGTG CGGGTGCTGG AGGGCAAGGA CTACCTCAAG
CACGTCGGGC CCAAGATCTT TGTTGTGGAC CAGGACAACG TGAAGGACGT TGCGCGCGAG
AATATCCTGC CGCCTGACGG GTTCTCTCCG GTTTTCAGCG TCACGCAATA A
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| Protein sequence | MKLFLNTASA LLLSVALPAT AQEAWFPYPA EEVTPAFSAD GSVAEITYEP LAAAEKPWNI
CVSFPHMKDA YWLGVDYGVV AEAERLGVNL NVVEAGGYTE LNTQISQIED CVASGADAVI
VGAISYDGLN NVISEVAGKG IPVIDVINGV SSTEIAAKSL VSFRTMGFET GKYLAEKHPA
GADPVTVGWF PGPAGAGWVE AANTGFMAAV EGSAVKVLEP RYGDTGKEAQ LKLVEDVLQA
NPEISYIAGT AVTAEAAQGV IRERGLKGEV DILAFYMTPG VYSGIQRGFI TGAPADSMVI
QGRVAVDQAV RVLEGKDYLK HVGPKIFVVD QDNVKDVARE NILPPDGFSP VFSVTQ
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