| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3144 |
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| Symbol | |
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| ID | 4075016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 123368 |
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| End bp | 124948 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638004647 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_611380 |
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| Protein GI | 99078122 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000116165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACCA CGACTGTATT GACACTGACG TCGCTGCTGC TGGCGTCTGC GGCGCCGCTG
AGCGCGGAAA CCCTGCGCTG GGCGCGTTCT GGCGATGCGC TGACGCTGGA TCCGCATGCC
CAGAACGAAG GGCCCACGCA TACCGTCCGT CACCAGATGT ATGAGCCGCT CATCATCCGC
GACGTGACCG GCGCGTTTGA GCCCGCATTG GCGACCGAAT GGGCACCCAA GGAAGGCGAT
CCCAACGTTT GGGTGTTCAA GCTGCGTGAG GGCGTGAAGT TCCACGGCGG CGAGGATTTC
ACCGCTGAGG ATGTGGTGTT CTCTTTTGAA CGCGCCAAGC AGGCCAACTC CGACATGAAG
GAGCTTATTG GCTCCATCAC CGAGGTGCGC GCTGTTGATG ATCTGACCGT CGAGATCGTC
ACCGATGGTC CGAACCCGAT CCTGCCGTCG AACCTCACCA ACCTGTTCAT CATGGACAAG
GGCTGGACCG AGGCCAACAA CACCGTGAAC GTGCAGGATT TTGAGGGCGG CGAAATCACC
TATGCCACCA CCAATGCCAA CGGCACCGGT CCCTATGTGC TGCAAAGCCG CGAGCCGGAC
GTCAAAACCG TGATGACGCT CAACGAGAAC TACTGGGGCA AGGACCAGTT CCCGCTCGAA
GTGACCGAGA TCGTCTACAC GCCGATCCAG AATCCCGCGA CCCGCGTGGC AGCGCTCTTG
TCGGGTGAGA TCGACTTCCT TCAGGACATG CCGGTGCAGG ATCTTGACCG CGTCAGCGGT
GCAGATGGTC TGATGGTGCG CAAGGCGCCG CAGAACCGCG TGATCTTCTT TGGCATGAAC
ATGGGTGCCG ATGACATCGA AGCCGACAAC GTTGATGGCA AGAACCCGCT CGCTGATGTG
CGCGTGCGCA AGGCGATGTC GATGGCGATC AACCGCGATG CAATCCAGAA GGTCGTTATG
CGCGGCCAGT CGCAGCCGGC AGGCATGATC GCGCCGCCGT TTGTCAACGG CTGGACCGAA
GAGATGGACT CGGAATCCAA GACAGACATC GAAGGCGCCA AGGCGCTGAT GGCCGAAGCG
GGCTACGCGG ATGGCTTCTC GATCCGTCTG GACTGTCCCA ACGACCGTTA CGTCAACGAC
GAGCCGATCT GTCAGGCCGC CGTGGGCATG CTGGGTCAGA TCGGGATTAC CGTGAACCTC
GACGCCAAAC CCAAGGCGCA GCACTTCCCG CTGATCACCG ATGGCAAGAC CGACTTCTAC
ATGCTGGGCT GGGGCGTGCC GACATACGAC TCCGAGTATA TCTTCAACTT CCTCGTGCAT
GGTCGTGAGA GCGACATCGG CACCTGGAAC GGCACCGGCT TTGACAATGA CGAGCTGGAC
GCGAAGATCA AATCTCTGGC GTCGAACACC GATCTTGAAG CGCGCAACCA GGACATCGCA
GATATCTGGC GTGTGGTTCA GGACGAGCAG CTCTATATCC CGATCCACCA TCAGGTGCTG
AACTGGGGCA TGTCCGAGAA GGTCGACATC GCTGTCGATC CCGAGGATCA GCCGAAGGTC
AAATACTTCA AGATGAACTG A
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| Protein sequence | MKTTTVLTLT SLLLASAAPL SAETLRWARS GDALTLDPHA QNEGPTHTVR HQMYEPLIIR
DVTGAFEPAL ATEWAPKEGD PNVWVFKLRE GVKFHGGEDF TAEDVVFSFE RAKQANSDMK
ELIGSITEVR AVDDLTVEIV TDGPNPILPS NLTNLFIMDK GWTEANNTVN VQDFEGGEIT
YATTNANGTG PYVLQSREPD VKTVMTLNEN YWGKDQFPLE VTEIVYTPIQ NPATRVAALL
SGEIDFLQDM PVQDLDRVSG ADGLMVRKAP QNRVIFFGMN MGADDIEADN VDGKNPLADV
RVRKAMSMAI NRDAIQKVVM RGQSQPAGMI APPFVNGWTE EMDSESKTDI EGAKALMAEA
GYADGFSIRL DCPNDRYVND EPICQAAVGM LGQIGITVNL DAKPKAQHFP LITDGKTDFY
MLGWGVPTYD SEYIFNFLVH GRESDIGTWN GTGFDNDELD AKIKSLASNT DLEARNQDIA
DIWRVVQDEQ LYIPIHHQVL NWGMSEKVDI AVDPEDQPKV KYFKMN
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