| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3312 |
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| Symbol | |
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| ID | 4075717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 321168 |
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| End bp | 322187 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638004820 |
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| Product | putative periplasmic solute-binding protein |
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| Protein accession | YP_611546 |
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| Protein GI | 99078288 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00706911 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATA TCGCTCTTAC GGTTCTGGCT GCAACCGCTC TTGCGGCACC GCTGACCGCG
TCTTTTGCAT CTTCGGCGCA GGCCGAAGAC GCCATCTGCT ACAATTGCCC CCCGCAATGG
GCGGATTGGG CGTCCATGCT GGAGGCCATC GAGACCGAGA TCGGTGTCAG CCTTCCGCAT
GACAACAAGA ACTCCGGCCA GACATTTGCA CAGCTTGTGG CTGAAAAAGA CAGCCCCGTG
GCAGATGTGG CCTATTACGG TGTGACCACC GGCATCAAGG CGGGCAAGGA AGGTCTGGTC
GAGGCGTACA AGCCCGCAGG TTTTGACGAG ATCCCGGAGG GGCTCAAAGA CCCCGAAGGC
AAGTGGTTCG CAGTGCATTA CGGCACCATC GGGTTCTTTG TGAATGTGGA CGCCCTTGGC
GGCGCGCCCG TCCCGCAGTG CTTTGCAGAC CTGAAAAAGC CTGCCTATCA GGGAATGGTG
GGTTATCTGG ATCCCTCGTC GGCCTTTGTC GGATATGCCG GGGCCGTCGC CGTCAACCTT
TCCTTTGGGG GCGATCTGCA AGACTTTGAC CCCGCAATCG AGTATTTTTC CGAGCTGGCA
GAGAACGCAC CGATCGTGCC CAAGCAGACG TCTTATGCGC GGGTCGTATC GGGAGAGATC
CCGATCCTGT TTGATTACGA CTTCAACGCC TATCGCGCGA AATACGAAGA AGACGGAAAT
TTTGAATTTG TCCTGCCCTG CGAGGGGTCG GTGCGTGTAC CCTATGTCAT GAGCCTCGTG
GGCAATGCGC CTCACGGCGA GACCGGCAAG AAGGTTCTGG ATTTCATTCT CTCTGACAAA
GGGCAGGCGA TCTGGACCAA CGCCTATCTG CAGCCCGCGC GCCCGGTTGA GCTGCCTGCT
GAGGTGGCGG AGAAATTCCT GCCCGCCAGC GATTATGCCC GTGCACAGGC TGTGAACTAT
GCAGAGATGG AAAAGGCGCA GGCCGGTTTT GGCGAACGCT ACCTGAACGA AGTCAAATAA
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| Protein sequence | MKHIALTVLA ATALAAPLTA SFASSAQAED AICYNCPPQW ADWASMLEAI ETEIGVSLPH
DNKNSGQTFA QLVAEKDSPV ADVAYYGVTT GIKAGKEGLV EAYKPAGFDE IPEGLKDPEG
KWFAVHYGTI GFFVNVDALG GAPVPQCFAD LKKPAYQGMV GYLDPSSAFV GYAGAVAVNL
SFGGDLQDFD PAIEYFSELA ENAPIVPKQT SYARVVSGEI PILFDYDFNA YRAKYEEDGN
FEFVLPCEGS VRVPYVMSLV GNAPHGETGK KVLDFILSDK GQAIWTNAYL QPARPVELPA
EVAEKFLPAS DYARAQAVNY AEMEKAQAGF GERYLNEVK
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