36 homologs were found in PanDaTox collection
for query gene TBFG_12768 on replicon NC_009565
Organism: Mycobacterium tuberculosis F11



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009565  TBFG_12768  type I restriction/modification system specificity determinant hsdS.1  100 
 
 		 91 aa  184  2e-46  Mycobacterium tuberculosis F11  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_1087  type I restriction-modification system, S subunit  53.85 
 
 		 422 aa  113  7.999999999999999e-25  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.247708  n/a   
 
 
-
 
NC_009921  Franean1_3768  restriction modification system DNA specificity subunit  51.72 
 
 		 374 aa  100  8e-21  Frankia sp. EAN1pec  Bacteria  normal  0.36553  normal  1 
 
 
-
 
NC_011884  Cyan7425_3075  restriction modification system DNA specificity domain protein  53.33 
 
 		 388 aa  97.8  5e-20  Cyanothece sp. PCC 7425  Bacteria  normal  0.40504  normal  1 
 
 
-
 
NC_011761  AFE_2791  type I restriction-modification system, S subunit  50.55 
 
 		 418 aa  97.1  8e-20  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_011206  Lferr_2415  restriction modification system DNA specificity domain  50.55 
 
 		 418 aa  97.1  8e-20  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.589349  normal  0.260014 
 
 
-
 
NC_013946  Mrub_2452  restriction modification system DNA specificity domain-containing protein  51.65 
 
 		 419 aa  95.9  2e-19  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  0.587532 
 
 
-
 
NC_002977  MCA0836  type I restriction-modification system S subunit  50.55 
 
 		 416 aa  94.7  4e-19  Methylococcus capsulatus str. Bath  Bacteria  normal  0.444813  n/a   
 
 
-
 
NC_008761  Pnap_4778  restriction modification system DNA specificity subunit  49.45 
 
 		 415 aa  94  6e-19  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.16943  normal  1 
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  47.13 
 
 		 413 aa  88.6  3e-17  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_011832  Mpal_1094  restriction modification system DNA specificity domain protein  43.82 
 
 		 205 aa  86.7  9e-17  Methanosphaerula palustris E1-9c  Archaea  normal  0.0782363  normal  0.473834 
 
 
-
 
NC_011071  Smal_1037  restriction modification system DNA specificity domain  44.32 
 
 		 364 aa  81.3  0.000000000000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0890662  normal  1 
 
 
-
 
NC_009975  MmarC6_0041  restriction modification system DNA specificity subunit  40.23 
 
 		 397 aa  81.3  0.000000000000005  Methanococcus maripaludis C6  Archaea  normal  1  n/a   
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  45.98 
 
 		 414 aa  80.5  0.000000000000008  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  1  n/a   
 
 
-
 
NC_013158  Huta_0102  restriction modification system DNA specificity domain protein  45 
 
 		 442 aa  78.2  0.00000000000004  Halorhabdus utahensis DSM 12940  Archaea  normal  1  n/a   
 
 
-
 
NC_009483  Gura_0549  restriction modification system DNA specificity subunit  39.76 
 
 		 385 aa  75.9  0.0000000000002  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_3499  restriction modification system DNA specificity subunit  38.89 
 
 		 405 aa  73.2  0.000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  0.082109 
 
 
-
 
NC_009801  EcE24377A_2910  putative type I restriction-modification system, S subunit  37.18 
 
 		 373 aa  63.2  0.000000001  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_008025  Dgeo_2016  restriction modification system DNA specificity subunit  40 
 
 		 417 aa  62.4  0.000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0839323  normal  1 
 
 
-
 
NC_009523  RoseRS_0735  restriction modification system DNA specificity subunit  35.29 
 
 		 392 aa  61.2  0.000000004  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.142305 
 
 
-
 
NC_009665  Shew185_2194  restriction modification system DNA specificity subunit  33.33 
 
 		 427 aa  58.2  0.00000004  Shewanella baltica OS185  Bacteria  normal  0.122675  n/a   
 
 
-
 
NC_007955  Mbur_1218  restriction modification system DNA specificity subunit  34.15 
 
 		 351 aa  58.2  0.00000004  Methanococcoides burtonii DSM 6242  Archaea  normal  0.67755  n/a   
 
 
-
 
NC_013421  Pecwa_1672  restriction modification system DNA specificity domain protein  31.76 
 
 		 493 aa  56.2  0.0000001  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_009052  Sbal_4348  restriction modification system DNA specificity subunit  35 
 
 		 363 aa  55.8  0.0000002  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_0249  restriction modification system DNA specificity subunit  36.36 
 
 		 393 aa  55.8  0.0000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_008541  Arth_0987  restriction modification system DNA specificity subunit  38.67 
 
 		 390 aa  55.5  0.0000003  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_007514  Cag_0808  specificity determinant HsdS-like  34.57 
 
 		 363 aa  54.3  0.0000006  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.361917  n/a   
 
 
-
 
NC_011726  PCC8801_2988  restriction modification system DNA specificity domain protein  32.22 
 
 		 386 aa  52  0.000003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010577  XfasM23_2176  restriction modification system DNA specificity subunit  39.19 
 
 		 444 aa  51.6  0.000004  Xylella fastidiosa M23  Bacteria  normal  0.962317  n/a   
 
 
-
 
NC_007969  Pcryo_0951  restriction modification system DNA specificity subunit  28.57 
 
 		 419 aa  51.2  0.000004  Psychrobacter cryohalolentis K5  Bacteria  normal  1  unclonable  0.0000406123 
 
 
-
 
NC_010658  SbBS512_E4810  putative type I restriction-modification system specificity subunit  34.94 
 
 		 360 aa  47.8  0.00006  Shigella boydii CDC 3083-94  Bacteria  normal  1  n/a   
 
 
-
 
NC_008532  STER_0750  restriction endonuclease S subunit  31.65 
 
 		 387 aa  44.7  0.0004  Streptococcus thermophilus LMD-9  Bacteria  normal  1  n/a   
 
 
-
 
NC_011060  Ppha_2394  hypothetical protein  28.05 
 
 		 87 aa  43.5  0.0009  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_0414  restriction modification system DNA specificity subunit  31.82 
 
 		 439 aa  42.4  0.002  Marinobacter aquaeolei VT8  Bacteria  normal  0.405933  n/a   
 
 
-
 
NC_009943  Dole_0277  restriction modification system DNA specificity subunit  32.91 
 
 		 413 aa  42  0.003  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_009565  TBFG_12774  type I restriction/modification system specificity determinant hsdS  29.21 
 
 		 364 aa  40.8  0.006  Mycobacterium tuberculosis F11  Bacteria  normal  1  normal  1 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>