24 homologs were found in PanDaTox collection
for query gene Pnec_1229 on replicon NC_010531
Organism: Polynucleobacter necessarius subsp. necessarius STIR1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010531  Pnec_1229  transcriptional regulator, LysR family  100 
 
 		 69 aa  139  9.999999999999999e-33  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009379  Pnuc_0626  LysR family transcriptional regulator  82.35 
 
 		 302 aa  115  1.9999999999999998e-25  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  hitchhiker  0.0000000742904  n/a   
 
 
-
 
NC_010676  Bphyt_6326  transcriptional regulator, LysR family  49.25 
 
 		 304 aa  72  0.000000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_2743  LysR family transcriptional regulator  44.12 
 
 		 303 aa  66.6  0.0000000001  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010501  PputW619_2874  LysR family transcriptional regulator  44.12 
 
 		 303 aa  66.6  0.0000000001  Pseudomonas putida W619  Bacteria  normal  0.0140369  normal  0.789599 
 
 
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NC_008825  Mpe_A2897  LysR family transcriptional regulator  49.28 
 
 		 329 aa  65.1  0.0000000003  Methylibium petroleiphilum PM1  Bacteria  normal  0.0508899  normal  1 
 
 
-
 
NC_007492  Pfl01_5293  LysR family transcriptional regulator  44.44 
 
 		 305 aa  62.4  0.000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.143312  normal  0.444279 
 
 
-
 
NC_008463  PA14_02650  putative malonate utilization transcriptional regulator  44.44 
 
 		 309 aa  62.8  0.000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0883739  normal  0.518056 
 
 
-
 
NC_008781  Pnap_0955  LysR family transcriptional regulator  46.03 
 
 		 304 aa  60.8  0.000000006  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012560  Avin_10390  malonate utilisation transciptional regulator, LysR family  42.86 
 
 		 305 aa  60.1  0.000000009  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009656  PSPA7_0301  malonate utilization transcriptional regulator  42.86 
 
 		 309 aa  60.1  0.000000009  Pseudomonas aeruginosa PA7  Bacteria  normal  0.477196  n/a   
 
 
-
 
NC_007348  Reut_B4924  LysR family transcriptional regulator  47.06 
 
 		 306 aa  60.1  0.00000001  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_012792  Vapar_5377  transcriptional regulator, LysR family  46.77 
 
 		 304 aa  58.9  0.00000002  Variovorax paradoxus S110  Bacteria  normal  0.0439251  n/a   
 
 
-
 
NC_004578  PSPTO_5078  malonate utilization transcriptional regulator  41.27 
 
 		 308 aa  59.3  0.00000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_0451  regulatory protein, LysR:LysR, substrate-binding  39.68 
 
 		 308 aa  58.2  0.00000004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.739905  normal  1 
 
 
-
 
NC_010002  Daci_1770  LysR family transcriptional regulator  42.86 
 
 		 304 aa  55.5  0.0000002  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010086  Bmul_3934  LysR family transcriptional regulator  46.88 
 
 		 305 aa  52.8  0.000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007511  Bcep18194_B1014  LysR family transcriptional regulator  47.62 
 
 		 347 aa  51.6  0.000004  Burkholderia sp. 383  Bacteria  normal  0.131098  normal  0.240236 
 
 
-
 
NC_012880  Dd703_1239  transcriptional regulator, LysR family  35.82 
 
 		 310 aa  50.1  0.00001  Dickeya dadantii Ech703  Bacteria  normal  0.538859  n/a   
 
 
-
 
NC_012912  Dd1591_2604  transcriptional regulator, LysR family  34.33 
 
 		 310 aa  49.7  0.00001  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_010678  Rpic_4938  transcriptional regulator, LysR family  42.19 
 
 		 301 aa  48.9  0.00003  Ralstonia pickettii 12J  Bacteria  normal  1  normal  0.182259 
 
 
-
 
NC_012857  Rpic12D_3862  transcriptional regulator, LysR family  42.19 
 
 		 301 aa  48.9  0.00003  Ralstonia pickettii 12D  Bacteria  normal  0.484372  normal  1 
 
 
-
 
NC_009436  Ent638_3771  LysR family transcriptional regulator  31.34 
 
 		 312 aa  46.2  0.0002  Enterobacter sp. 638  Bacteria  normal  0.368263  normal  0.0120548 
 
 
-
 
NC_008709  Ping_3660  transcriptional regulator, substrate-binding of LysR family protein  28.36 
 
 		 306 aa  40.8  0.007  Psychromonas ingrahamii 37  Bacteria  normal  1  normal  1 
 
 
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