| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5377 |
|---|
| Symbol | |
|---|
| ID | 7975838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 82670 |
|---|
| End bp | 83584 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644795971 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002947245 |
|---|
| Protein GI | 239820060 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0439251 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCTCC ACGTCGACGA AGAGATCACC TTCCGCAAGC TCGAGATCCT GCTGGCCTTC
ATGGAGACCG GCAACCTGGC GCGCGCGGCC GAAAAGCTCG AGATCAGCAC CGTGAGCGTG
CACCGCGCAC TGCACTCGCT GGAAACCGGC CTGCGCTGCG CGCTGTTCCG GCACGAGGGC
CGCAACCTGC ATCCGACCGA TGCGGCACAG GCGCTGGCAG ACGTGGCGCG CGATGTGCTG
CGCACCATGT CCGAGGGCAT CCGCGCGACA CGGGAAGTGG CCGGCTACTC GTCCGACCGG
ATCCGCATCG GCTCGCTCTA TTCGCTGACG AGCCGCACGG TGCCGCGGCT GATCATGGGG
CTGAAGCTGC GCAAGCCCGA GCTGCACACC GAGCTCGTGC TCGGCTCCAA CGCCGACCTC
CTGCAGAAGC TGCGCGACGG CGCCATCGAT GCCGCCCTCA TGGCGGTGCC CGAGGGAACG
GCGGACGTCG AGTCGGAGCC TCTGTTCGAG GACGACATCC GGTTCGCCGC CCCGGTGGGC
TCCCCCTATT CGGGGCAGAA GGAGATCGAC CTGGCCGCCT GCGCCGGCGA GCGCTTCGTG
AGCCTGAGCG AAGGCTTCGT CACCTACAGC GGCTTCGTGG AGTCGTTTCG CGTGGCCGGA
TTCACGCCCA ACGTGGTGAT GGAGACGGGC GACATCTTCT CGCTCATGAA CCTGGTGAGC
GGCGGCGTCG GCTACACGCT GCTGCCGGGC CGCGTGTGGG GCGTGATGCC GCAGAACGTG
CAGCTGATCC CGCTGCAGCC CCGCTACCTG ATGCGCCAGA CCATCGCGCT CAACTTCCTG
CGCACGCGCG AGCGCGATCC CAACCTGCTT GCGCTGCTGG CGCTGTGCCG CACCTCCAAG
GCCGAACTGG CCTAG
|
|---|
| Protein sequence | MLLHVDEEIT FRKLEILLAF METGNLARAA EKLEISTVSV HRALHSLETG LRCALFRHEG
RNLHPTDAAQ ALADVARDVL RTMSEGIRAT REVAGYSSDR IRIGSLYSLT SRTVPRLIMG
LKLRKPELHT ELVLGSNADL LQKLRDGAID AALMAVPEGT ADVESEPLFE DDIRFAAPVG
SPYSGQKEID LAACAGERFV SLSEGFVTYS GFVESFRVAG FTPNVVMETG DIFSLMNLVS
GGVGYTLLPG RVWGVMPQNV QLIPLQPRYL MRQTIALNFL RTRERDPNLL ALLALCRTSK
AELA
|
|---|
| |