More than 300 homologs were found in PanDaTox collection
for query gene Meso_2135 on replicon NC_008254
Organism: Chelativorans sp. BNC1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008254  Meso_2135  cold-shock DNA-binding protein family protein  100 
 
 
70 aa  141  3e-33  Chelativorans sp. BNC1  Bacteria  normal  0.24851  n/a   
 
 
-
 
NC_004310  BR1514  cold-shock family protein  76.81 
 
 
71 aa  112  1.0000000000000001e-24  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1464  cold-shock family protein  76.81 
 
 
83 aa  112  1.0000000000000001e-24  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2134  cold-shock DNA-binding protein family protein  77.94 
 
 
70 aa  112  2.0000000000000002e-24  Chelativorans sp. BNC1  Bacteria  normal  0.895111  n/a   
 
 
-
 
NC_008347  Mmar10_2873  cold-shock DNA-binding protein family protein  78.79 
 
 
70 aa  110  6e-24  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_1650  cold-shock DNA-binding domain-containing protein  73.91 
 
 
71 aa  109  1.0000000000000001e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2743  cold-shock DNA-binding domain protein  75.36 
 
 
71 aa  107  4.0000000000000004e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3003  cold-shock DNA-binding domain protein  75.36 
 
 
71 aa  107  4.0000000000000004e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.667413 
 
 
-
 
NC_011989  Avi_3156  cold shock protein  73.91 
 
 
71 aa  108  4.0000000000000004e-23  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2238  cold-shock DNA-binding domain-containing protein  73.91 
 
 
71 aa  107  5e-23  Sinorhizobium medicae WSM419  Bacteria  normal  0.611476  normal 
 
 
-
 
NC_011369  Rleg2_2208  cold-shock DNA-binding domain protein  73.53 
 
 
70 aa  105  2e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2503  cold-shock DNA-binding domain protein  73.53 
 
 
70 aa  105  2e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.731962 
 
 
-
 
NC_009636  Smed_1620  cold-shock DNA-binding domain-containing protein  73.13 
 
 
70 aa  102  2e-21  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.246445 
 
 
-
 
NC_007778  RPB_1179  cold-shock DNA-binding domain-containing protein  65.22 
 
 
70 aa  101  3e-21  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.810409  normal  0.131975 
 
 
-
 
NC_007964  Nham_3148  cold-shock DNA-binding domain-containing protein  66.67 
 
 
71 aa  101  4e-21  Nitrobacter hamburgensis X14  Bacteria  normal  0.0858327  n/a   
 
 
-
 
NC_011988  Avi_5567  cold shock protein  71.64 
 
 
70 aa  100  8e-21  Agrobacterium vitis S4  Bacteria  normal  0.197261  n/a   
 
 
-
 
NC_009485  BBta_1730  cold-shock DNA-binding protein family protein  62.32 
 
 
71 aa  99  2e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.244991 
 
 
-
 
NC_007958  RPD_1283  cold-shock DNA-binding domain protein  63.77 
 
 
70 aa  99  2e-20  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.165738 
 
 
-
 
NC_011004  Rpal_1364  cold-shock DNA-binding domain protein  63.77 
 
 
71 aa  98.6  2e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.185476  n/a   
 
 
-
 
NC_007925  RPC_0899  cold-shock DNA-binding domain-containing protein  62.32 
 
 
70 aa  97.4  5e-20  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0662  cold-shock DNA-binding domain-containing protein  60.87 
 
 
70 aa  97.4  6e-20  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.662229 
 
 
-
 
NC_010725  Mpop_4422  cold-shock DNA-binding domain protein  65.67 
 
 
69 aa  89.7  1e-17  Methylobacterium populi BJ001  Bacteria  normal  normal  0.369024 
 
 
-
 
NC_010172  Mext_3947  cold-shock protein DNA-binding  66.15 
 
 
69 aa  89.7  1e-17  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.246482 
 
 
-
 
NC_011757  Mchl_4315  cold-shock DNA-binding domain protein  66.15 
 
 
69 aa  89.7  1e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0374104  normal  0.166197 
 
 
-
 
NC_010510  Mrad2831_6274  cold-shock DNA-binding domain-containing protein  58.21 
 
 
69 aa  86.7  1e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.517051  normal 
 
 
-
 
NC_009952  Dshi_0009  cold-shock DNA-binding domain protein  62.12 
 
 
68 aa  85.1  3e-16  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_2344  cold-shock DNA-binding domain-containing protein  68.75 
 
 
249 aa  84  7e-16  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.157339 
 
 
-
 
NC_010511  M446_5491  cold-shock DNA-binding domain-containing protein  60.94 
 
 
69 aa  83.6  8e-16  Methylobacterium sp. 4-46  Bacteria  normal  0.599855  normal  0.0633447 
 
 
-
 
NC_010725  Mpop_4677  cold-shock DNA-binding domain protein  57.58 
 
 
69 aa  83.6  9e-16  Methylobacterium populi BJ001  Bacteria  normal  0.403947  normal 
 
 
-
 
NC_010505  Mrad2831_5022  cold-shock DNA-binding domain-containing protein  65.45 
 
 
69 aa  82.8  0.000000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.499823  normal 
 
 
-
 
NC_010172  Mext_4164  cold-shock protein DNA-binding  58.46 
 
 
69 aa  83.2  0.000000000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.593748  normal 
 
 
-
 
NC_011757  Mchl_4533  cold-shock DNA-binding domain protein  58.46 
 
 
69 aa  83.2  0.000000000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_3142  cold-shock DNA-binding protein family protein  67.69 
 
 
267 aa  82.8  0.000000000000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.11906  n/a   
 
 
-
 
NC_009636  Smed_2005  cold-shock DNA-binding domain-containing protein  62.5 
 
 
69 aa  82.8  0.000000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.745199  normal 
 
 
-
 
NC_010511  M446_2980  cold-shock DNA-binding domain-containing protein  59.7 
 
 
73 aa  82.4  0.000000000000002  Methylobacterium sp. 4-46  Bacteria  decreased coverage  0.0073832  normal  0.0936276 
 
 
-
 
NC_010730  SYO3AOP1_0368  cold-shock DNA-binding domain protein  60.29 
 
 
68 aa  82  0.000000000000003  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  unclonable  2.16983e-16  n/a   
 
 
-
 
NC_007802  Jann_3625  cold-shock DNA-binding protein family protein  64.06 
 
 
68 aa  82  0.000000000000003  Jannaschia sp. CCS1  Bacteria  normal  0.164813  normal  0.0835288 
 
 
-
 
NC_011894  Mnod_0841  cold-shock DNA-binding domain protein  63.49 
 
 
69 aa  81.6  0.000000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_6033  cold-shock DNA-binding domain-containing protein  66.67 
 
 
69 aa  81.6  0.000000000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.263263  normal  0.0669471 
 
 
-
 
NC_009952  Dshi_2219  putative cold-shock DNA-binding domain protein  57.58 
 
 
68 aa  81.3  0.000000000000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1810  cold-shock DNA-binding domain protein  59.38 
 
 
69 aa  81.3  0.000000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.275955  n/a   
 
 
-
 
NC_007964  Nham_3436  cold-shock DNA-binding domain-containing protein  64.18 
 
 
69 aa  80.9  0.000000000000005  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_2065  cold-shock DNA-binding domain-containing protein  56.72 
 
 
68 aa  80.9  0.000000000000005  Paracoccus denitrificans PD1222  Bacteria  normal  hitchhiker  0.00142025 
 
 
-
 
NC_010581  Bind_3098  cold-shock DNA-binding domain-containing protein  60.94 
 
 
69 aa  80.9  0.000000000000006  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.392301 
 
 
-
 
NC_009720  Xaut_3214  cold-shock DNA-binding domain-containing protein  66.15 
 
 
68 aa  80.5  0.000000000000007  Xanthobacter autotrophicus Py2  Bacteria  normal  0.265865  normal 
 
 
-
 
NC_010338  Caul_4283  cold-shock DNA-binding domain-containing protein  65.45 
 
 
68 aa  80.1  0.000000000000009  Caulobacter sp. K31  Bacteria  normal  normal  0.331477 
 
 
-
 
NC_009719  Plav_3161  cold-shock DNA-binding domain-containing protein  57.81 
 
 
69 aa  79.7  0.00000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.161902  normal  0.108125 
 
 
-
 
NC_011757  Mchl_0846  cold-shock DNA-binding domain protein  59.38 
 
 
69 aa  79  0.00000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.012505 
 
 
-
 
NC_007493  RSP_2024  cold-shock DNA-binding protein family protein  57.58 
 
 
68 aa  79  0.00000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3723  cold-shock DNA-binding domain-containing protein  56.06 
 
 
179 aa  79  0.00000000000002  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_3878  cold-shock DNA-binding domain protein  61.19 
 
 
69 aa  79  0.00000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7552  cold-shock DNA-binding protein family protein  60.87 
 
 
69 aa  79  0.00000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.229595  normal 
 
 
-
 
NC_010172  Mext_0886  cold-shock protein DNA-binding  59.38 
 
 
69 aa  79  0.00000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0757124 
 
 
-
 
NC_010338  Caul_3209  cold-shock DNA-binding domain-containing protein  68.42 
 
 
67 aa  79.3  0.00000000000002  Caulobacter sp. K31  Bacteria  normal  normal  0.522557 
 
 
-
 
NC_009049  Rsph17029_0735  cold-shock DNA-binding domain-containing protein  57.58 
 
 
68 aa  79  0.00000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.976411  normal  0.373537 
 
 
-
 
NC_009431  Rsph17025_4329  hypothetical protein  57.58 
 
 
68 aa  79  0.00000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.208733 
 
 
-
 
NC_010172  Mext_1892  cold-shock protein DNA-binding  56.06 
 
 
69 aa  79.3  0.00000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1893  cold-shock protein DNA-binding  62.96 
 
 
69 aa  78.2  0.00000000000003  Methylobacterium extorquens PA1  Bacteria  normal  0.208302  normal 
 
 
-
 
NC_008347  Mmar10_1185  cold-shock DNA-binding protein family protein  57.81 
 
 
69 aa  78.2  0.00000000000003  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2901  cold-shock DNA-binding protein family protein  61.54 
 
 
288 aa  78.2  0.00000000000003  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.654674 
 
 
-
 
NC_007778  RPB_2176  cold-shock DNA-binding domain-containing protein  57.97 
 
 
69 aa  77.8  0.00000000000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.141033  normal  0.0176419 
 
 
-
 
NC_011757  Mchl_1345  cold-shock DNA-binding domain protein  54.55 
 
 
69 aa  78.2  0.00000000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.708004 
 
 
-
 
NC_007958  RPD_3257  cold-shock protein, DNA-binding  57.97 
 
 
69 aa  77.8  0.00000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0261895 
 
 
-
 
NC_010172  Mext_1185  cold-shock protein DNA-binding  54.55 
 
 
69 aa  78.2  0.00000000000004  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0202677 
 
 
-
 
NC_011886  Achl_1131  cold-shock DNA-binding domain protein  57.81 
 
 
67 aa  77.8  0.00000000000004  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.294478 
 
 
-
 
NC_013946  Mrub_0662  cold-shock DNA-binding domain-containing protein  52.24 
 
 
75 aa  78.2  0.00000000000004  Meiothermus ruber DSM 1279  Bacteria  hitchhiker  0.000214016  normal 
 
 
-
 
NC_007964  Nham_2750  cold-shock DNA-binding domain-containing protein  61.19 
 
 
69 aa  77.8  0.00000000000005  Nitrobacter hamburgensis X14  Bacteria  normal  0.33157  n/a   
 
 
-
 
NC_009621  Smed_5421  cold-shock DNA-binding domain-containing protein  57.81 
 
 
68 aa  77.4  0.00000000000006  Sinorhizobium medicae WSM419  Bacteria  normal  0.14942  normal  0.64967 
 
 
-
 
NC_009484  Acry_0003  cold-shock DNA-binding domain-containing protein  60.32 
 
 
67 aa  77.4  0.00000000000006  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1752  cold-shock DNA-binding protein family protein  56.06 
 
 
68 aa  77.4  0.00000000000006  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR1492  cold-shock family protein  57.81 
 
 
69 aa  77  0.00000000000007  Brucella suis 1330  Bacteria  normal  0.136425  n/a   
 
 
-
 
NC_011666  Msil_1798  cold-shock DNA-binding domain protein  59.38 
 
 
69 aa  77  0.00000000000007  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009667  Oant_1676  cold-shock DNA-binding domain-containing protein  57.81 
 
 
69 aa  77.4  0.00000000000007  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00586625  n/a   
 
 
-
 
NC_010581  Bind_3035  cold-shock DNA-binding domain-containing protein  56.25 
 
 
69 aa  77.4  0.00000000000007  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.084577  normal 
 
 
-
 
NC_007406  Nwi_2375  cold-shock protein, DNA-binding  59.7 
 
 
69 aa  77  0.00000000000008  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.583398  normal 
 
 
-
 
NC_011365  Gdia_2681  cold-shock DNA-binding domain protein  56.25 
 
 
68 aa  77  0.00000000000008  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.741556  normal 
 
 
-
 
NC_007925  RPC_3705  cold-shock DNA-binding domain-containing protein  57.14 
 
 
70 aa  77  0.00000000000009  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.59949  normal 
 
 
-
 
NC_009636  Smed_1949  cold-shock DNA-binding domain-containing protein  58.46 
 
 
69 aa  77  0.00000000000009  Sinorhizobium medicae WSM419  Bacteria  normal  0.589262  normal  0.169365 
 
 
-
 
NC_008254  Meso_3306  cold-shock DNA-binding protein family protein  58.73 
 
 
69 aa  77  0.00000000000009  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0812  cold-shock DNA-binding domain protein  56.25 
 
 
69 aa  77  0.00000000000009  Methylobacterium populi BJ001  Bacteria  normal  0.674883  normal  0.12074 
 
 
-
 
NC_009431  Rsph17025_4258  hypothetical protein  54.55 
 
 
68 aa  77  0.00000000000009  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.321323  normal  0.982609 
 
 
-
 
NC_009505  BOV_0430  cold-shock family protein  57.81 
 
 
69 aa  76.6  0.0000000000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7022  cold-shock DNA-binding protein family protein  55.56 
 
 
70 aa  76.6  0.0000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0599246  normal  0.604228 
 
 
-
 
NC_010505  Mrad2831_5378  cold-shock DNA-binding domain-containing protein  54.69 
 
 
69 aa  76.3  0.0000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.260469 
 
 
-
 
NC_007493  RSP_0386  cold-shock DNA-binding protein family protein  60 
 
 
68 aa  76.3  0.0000000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.654168  n/a   
 
 
-
 
NC_007493  RSP_0591  cold-shock DNA-binding protein family protein  53.85 
 
 
68 aa  76.3  0.0000000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3621  cold-shock DNA-binding protein  53.03 
 
 
77 aa  76.3  0.0000000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1521  cold-shock DNA-binding protein family protein  61.4 
 
 
68 aa  76.3  0.0000000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.490356  n/a   
 
 
-
 
NC_007778  RPB_1791  cold-shock DNA-binding domain-containing protein  55.56 
 
 
70 aa  76.6  0.0000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.29852 
 
 
-
 
NC_007958  RPD_3513  cold-shock DNA-binding domain protein  55.56 
 
 
70 aa  76.6  0.0000000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_0270  cold-shock DNA-binding domain protein  60.94 
 
 
67 aa  76.6  0.0000000000001  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4194  cold-shock DNA-binding domain protein  55.56 
 
 
70 aa  76.6  0.0000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.69443  n/a   
 
 
-
 
NC_008541  Arth_1055  cold-shock DNA-binding protein family protein  56.25 
 
 
67 aa  76.6  0.0000000000001  Arthrobacter sp. FB24  Bacteria  normal  0.481948  n/a   
 
 
-
 
NC_008686  Pden_0954  cold-shock DNA-binding domain-containing protein  57.89 
 
 
68 aa  76.6  0.0000000000001  Paracoccus denitrificans PD1222  Bacteria  normal  0.631034  normal  0.812615 
 
 
-
 
NC_008687  Pden_3140  cold-shock DNA-binding domain-containing protein  51.52 
 
 
68 aa  76.6  0.0000000000001  Paracoccus denitrificans PD1222  Bacteria  normal  0.577228  normal 
 
 
-
 
NC_009049  Rsph17029_2040  cold-shock DNA-binding domain-containing protein  60 
 
 
68 aa  76.3  0.0000000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2245  cold-shock DNA-binding domain-containing protein  53.85 
 
 
68 aa  76.3  0.0000000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.38362 
 
 
-
 
NC_009428  Rsph17025_0495  cold-shock DNA-binding domain-containing protein  53.85 
 
 
68 aa  76.3  0.0000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.309606 
 
 
-
 
NC_009428  Rsph17025_0850  cold-shock DNA-binding domain-containing protein  60 
 
 
68 aa  76.3  0.0000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009431  Rsph17025_4290  hypothetical protein  52.24 
 
 
68 aa  76.6  0.0000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>