Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5567 |
Symbol | cspA |
ID | 7381475 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 579676 |
End bp | 579888 |
Gene Length | 213 bp |
Protein Length | 70 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643649147 |
Product | cold shock protein |
Protein accession | YP_002547384 |
Protein GI | 222106593 |
COG category | [K] Transcription |
COG ID | [COG1278] Cold shock proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.197261 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCATCA AGGGCACCGT AAAATTCTTC AATCAGGACA AGGGCTTCGG CTTCATCACC CCGGAAGGCG GCGCGAAGGA CGTTTTCGTT CACATTTCCG CTCTCCAGGC TGCTGGCATC CAGACGCTTC GTGATGGCCA GGAAGTCACC TTCGACACCG AAGCTGACCG CATGGGCAAG GGCCCGAAGG CTGTAAACAT CCGCGCTGCG TGA
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Protein sequence | MAIKGTVKFF NQDKGFGFIT PEGGAKDVFV HISALQAAGI QTLRDGQEVT FDTEADRMGK GPKAVNIRAA
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