10 homologs were found in PanDaTox collection
for query gene CA2559_11513 on replicon NC_014230
Organism: Croceibacter atlanticus HTCC2559



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014230  CA2559_11513  putative alginate lyase  100 
 
 
348 aa  712    Croceibacter atlanticus HTCC2559  Bacteria  normal  0.291343  n/a   
 
 
-
 
NC_011138  MADE_01238  putative alginate lyase  35.43 
 
 
530 aa  169  6e-41  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3639  Poly(beta-D-mannuronate) lyase  35.96 
 
 
375 aa  152  8.999999999999999e-36  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.0665057  n/a   
 
 
-
 
NC_008228  Patl_3645  alginate lyase  31.62 
 
 
357 aa  149  8e-35  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.459698  n/a   
 
 
-
 
NC_007912  Sde_2839  Poly(beta-D-mannuronate) lyase  32.7 
 
 
367 aa  131  2.0000000000000002e-29  Saccharophagus degradans 2-40  Bacteria  unclonable  0.000000000000472325  normal  0.357499 
 
 
-
 
NC_007912  Sde_2478  cyclic nucleotide-binding domain-containing protein  26.61 
 
 
524 aa  83.2  0.000000000000007  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2873  Poly(beta-D-mannuronate) lyase  27.34 
 
 
1554 aa  78.2  0.0000000000002  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0258698 
 
 
-
 
NC_007912  Sde_2547  translation initiation factor SUI1  25 
 
 
611 aa  68.6  0.0000000001  Saccharophagus degradans 2-40  Bacteria  normal  0.858491  hitchhiker  0.00146085 
 
 
-
 
NC_007912  Sde_3286  Poly(beta-D-mannuronate) lyase  26.6 
 
 
343 aa  65.5  0.000000001  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00739048  normal  0.539484 
 
 
-
 
NC_010001  Cphy_0492  alginate lyase 2  22.53 
 
 
1556 aa  43.9  0.004  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
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