| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2873 |
|---|
| Symbol | |
|---|
| ID | 3968099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3636919 |
|---|
| End bp | 3641583 |
|---|
| Gene Length | 4665 bp |
|---|
| Protein Length | 1554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637921970 |
|---|
| Product | Poly(beta-D-mannuronate) lyase |
|---|
| Protein accession | YP_528342 |
|---|
| Protein GI | 90022515 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0258698 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAGTG TATTGCTTCC AGTAATGCTT CTGTCTTCGG GGGTAGCTCT AGCTACTAAT
GCTGAAGATA CGAACAGTTC AAATAATTAT GTTTCTTATA GTAATAACGG TTATGGCGAT
CATGCTAGCG CATTAACATT CGCTGCCGAA AACCGTTGTT CGCAAGTGCT TACCATTTGG
CGGCCTGCCC ATCCTCGAGC GTGCCCTTCA ACAGTAACCT GGGGTGAAGT TCTGCCTGGT
CTGTCAATTG GTGTAGCAAC TCAAGCATTC GATCGACCTA ATCGCGTAAT GTATAGCGAT
ATTTCAGTTA AAAACGAAAC GGGTTTATCT ATTGCTGCAG GCTCTAAGTT AATTTTTGCC
AATAGTTCTT TACCACTTTT AAATGCCGAA GGGCAAACAG AAGCTGGGCA GCCATACCTT
ATAACCACGC AAGATTTACC CTCTGGGCAA ACCGTTACGC TGCGCGCAGA ATTTAAGCCG
CGCCTTCGTC CGCTTAGCTT TGATGCAGGC TTTGATATAC TGCAAGTAAG CGACGGTGTA
GTAAGTATCG CTGGTGAAGC TAGGGTAGTG CGTACCTTAA CTGCAAATGT GAGTGACCCT
GCAGGCGTGA GTTCTGCCGT TAGCTATCAA TGGCAGGCCA ATGGGGTGGA TATTGCTGGT
GCAACTTCTG CAACCTATAA GCTTACCCCA GAAGACGAAA GCAAAGTTAT TACTGTCACG
GCATCTTATA TAGATGACGC GGGCTTTGCG GAAAATATCC AATCCAATGC AACTACGGCA
GTGGCCGCCC GCAATGAAAA TACCGAAGGC AACTTGCAAA TACAGGGCGA ACGCTTAGCT
GGTGCAACTT TGCGAGCCGT GCTGGGCGAC AATAACGGTA TAGCCGGTAA CGCTACTTAT
CATTGGTATG TAGAGGGCCA AGCTATAGAG GGTGCGACGG AATCTATTTT GTACCTTGGC
AGCGAGTTGG TGGGTAAAAC CATTACAGCT ACGGCAAGCT ATACCGACTA CGATGAATAT
TCAGAGTCGC CTTCCGCCAC TACTTCACAT ATTGCAACTT CAATAGTAAG TAGTGAACAA
GAGTTGGTTG CGGCCTTAGC GTCTGCTAGT AACGGCGAAT GGATAGCGCT CGCGAGTGGC
GAGTATGCCA ATATGGCAGA AATTGCCATT GCCAATGGCG TTACATTAAC TGCGGGCCAA
GATGGCGATG CGGTTATTAG CGGTGCGACA TGTATCGAAT TAAGCGGCAA TCAGTCTGGG
CTGGTTGGCT TAACATTTGA TAACTTAAGT CCATTATTTG GCTCCGCATG TGACGACAAT
AACAAGTTAA ACAGTGTATG GGTGTCTGGT GATAACGTTA CCGTTAGCCA TAACCGTTTT
CTTGGTCATG CTGAAGACCT CGGTAGTGTA GCCGAGTACA ACTACGTTTA TTTGCGTGGC
TCTTATAATG TTATTGAGCG CAATGTATTT AGCGGTAAGA ATCTAGATAT AAAAGGCGCA
GCAGTTTCTG TCTATAACAA AGGCGACGGC AGTGAAGGTG GTCATGTTGT TCAGTACAAC
CTGTTCAAAG ATATGCCTGG CACGAGCGTG CAATCTAGCG CTTACGCGTT ACAGGTTGGC
CGCTCTACGG GTAGCGACGG CTTAGGTGAA GGTCAGCACG TTGTGCGCTT TAACCGTTTC
GATAATGTAA TGGCAGACCG CCGCATTATT AAGGTTCAAG CTAGCCGCAG CAGCGTATAT
GGCAATACCA TTGTTAATTC AACCGGTGGT ATTTCGTTGG AAGACGGTTA TGAAAATACC
GTTAGCAATA ACGTTATACT TTCTGCGGGC GATAATAGCG ACGATAGCGG CATTATGTTC
AGCCCGTTTG GTCACACTGT TACTGGCAAT TATATCGCAG GATTAAAAAC CACCTCTTCG
CAACGCGCAG CGTTATTGTT AAATACAGAA ACGGTTGCCA ATTCTGGTAA TAGTGCACTA
AGCGTTAGCC GAGTAACTGT TGCTAACAAC ACTGTAATAA ACAGTAATAA TGCAATTGCT
ACTTATACCG GCAGTAAGTG TGTGGCAGAT ACTTTTGTTG CTAGTTTCGA AAATAACTTA
GTTGCTAACG GCGTTGCTGG TCAAGGGGCT AATGGTGCCG ACAGCTATGC GTTTGATAAC
GGTTGTGCAA TAAACTCCCT AGAAAGTAAC TTTAGCAACG AAACCTATTT TGCTTCAGGT
GCAGATCTTG TGCCGCTAGC GGGCAGTGCT GGTGAAGCAA CCTTAGTGGC AACGGCTAAT
GGCTTATTGA ACGATGCTAA TTCACTGGCG GGCGCAAATG CCAGCGCGTT AATAGTACTT
AGCGAATTAG ATGTGGGGCC TGGGTCGAGT TTTGTGCAAC CTGTAGCGGG TGCTTACAAC
GGTGCTTTAA ATCTTGATTT TACTCATTGG TACATCACTT TCCCTAGTGG CGATGCACAG
TACAACCCTC AGTGGTTACT CGATGGCTAT ACCAGTGAAA ACGAGTTTTA CTACGACGCC
GATGGCGCAG CTGTATTTAA AACACCAAAT ATAGCGGGCA CTACATCTGC CAATACAAAA
TACTCGCGTA CCGAGTTGCG TGAAATGATG CGCGGGCCAG AGCAAAGCCC TAAGCCAGCA
GATTGGCCAA GTACGCAAGG CATAAACAAA AACAACTGGG TGTTTTCTAA CTCGTATCAG
CGAGTGCAAT ATGAGGCCGG TGGTGTGGAT GGCGTGATGG AAGCCACACT CAAGGTTGAT
CATGTGTCTA CCACTGTTAC CGAAGGGTAC GAGTACATGA TGGGGCGGGT TATTGTTGGC
CAAATTCATG CGTCCGACGA TGAGCCATTC CGTTTGTACT ATCGCAAATT ACCGGGCAAC
AGTTTGGGGT CTGTGTATTT TGCTACCGAG GTGCCAGGCT TAGGCGATAA CCGCTACGAC
ATGATTGGTG ATAGCAAAGA AGACTCGCCA AACCCTTTAG ATGGCATTGC GCTGGGCGAA
GTTTGGAGTT ACCGCGTAGA AGCTAAGGGT GATGATTTAA CCGTTACCAT TATGCGTGAA
GGTAAACCAG ATGTTACGCG CACAGTAAAA ACTGCTGCCG CTTACGCCAA CGACTGGATG
TATTTTAAAG CGGGGGTGTA CAACCAAAAT AATGGTGGTG ATCCATCGGA TTACGCGCAA
GCAACCTTTT ATTCCATTGT TGTAAGTCAC GATGCGCCCC CAGTAGAACC GGGTAACGGT
GAAGATGAAG GTAATGGTGG AACAACCACA GAAGTTACCG ATGGCCCATC TTTGCAAACT
GCAATTCTTG CTGCTTCTGC AGGCGATACT ATCGAGATTG GCGCAGGTGA CTACGCCAAT
ATGGGCACAG TTGTGGTTAC CGACGGGGTG ACCATTACAC GCGCCGAAGG CAGTAACGCT
GTTATTTCTG GCGAGTTTTG TTTGCAGGTT AGTGGTGATG GTGCGCGTAT TACAGGGTTG
GAATTTGCGG ATTTAATTGT ACCCGCAGAT AGCGCTAATC ACTGCCGCAG CAATGGTGAT
GGCAATATTG TAATTACCGG TGATGACGTA GTGTTTGATC ACAACCTTCT GTCGGGTGAT
GCCGAATTCC CAACACCTGT GGACGACGAC GACCACAACT GGCTAGTACT AAAAGGCAGT
AACGCACTGG TTGAGCGCAA CACTTTTCAA AACCGTCGCG GTATAGCCGC AGATGGCGTA
AGCCAAGTGC GAGGTGGTTT TATTTCTATC TACGTAAATG GTTCTGCAAC GGGTAATACT
GTGCAATACA ACCTGTTTAA AGACATGTTG TTGAATGATC AGTCTACTGC GTATGCCATT
ATGCTTGGCC GAACCACTGG TTTAGATTCA ATGTTAGACG GGTTTAATAC TATTCAGTAC
AACCGTTTCG ATAATATTGA TTCCAAAACC CGCGTAATTC GAGTGCAGGG TAGTAGCAAT
ACTATTAGCC ACAACACTGT AGTCAATTCG CAAGGTATGC TCGCGTTAGA AAGCGGTCAA
AATAATGTTG TTAGCTACAA CGTTATTTTA CCTTCTGGTA CCGACAGTAA TGATGGCGGT
ATTTCTGCAG CGCCATACGG CCATACCATT GTGGGTAACT ATATTGCAGG CTCCAACACC
ACTTCCAGTG AGCGCGGTGC CATCTACCTA AATAACGACG TGGATGAGCC AGGTAACCTC
GCCGCTACGC CATCGGCAGT GGAAATAGCT GGCAACACGA TTATTAACTC TAAGCAACCC
ATTCATATTG GTGCTAAGGG CTGCGAAGTG GGCCCGGCGT TTATAGCAAA TTTCAGTAAC
AACCTAATAG CGAACGGTGT TAGCGGTGTA TCTGAATTTT ATGAAGGTGC GCCAGTTTCA
GGTCGAGCGG CTATTCGTTA CAGCTGTGAG CTAGACCCTG CACACTCGTT TACCGGCGAA
GCCTACTTTA GCGATTTGCT TTACAACACT TCGGGTGCGT ATGGCGGTGG CCTATGGTTC
GATGCTGCCA GCACCTTTGG TTACGACGGC GAGGCTACGC TAATAGCAGG CGAGAATGGC
TTAATAGAAG CTACTGGTTC TCTCGCTGGT AAAGGAGCGC CAAGTAATTC ATTAGTAGTG
GTAGAAGAGA CCGATGTAGG TGTGGGCTCT GCCACCAATT TTTAA
|
|---|
| Protein sequence | MRSVLLPVML LSSGVALATN AEDTNSSNNY VSYSNNGYGD HASALTFAAE NRCSQVLTIW
RPAHPRACPS TVTWGEVLPG LSIGVATQAF DRPNRVMYSD ISVKNETGLS IAAGSKLIFA
NSSLPLLNAE GQTEAGQPYL ITTQDLPSGQ TVTLRAEFKP RLRPLSFDAG FDILQVSDGV
VSIAGEARVV RTLTANVSDP AGVSSAVSYQ WQANGVDIAG ATSATYKLTP EDESKVITVT
ASYIDDAGFA ENIQSNATTA VAARNENTEG NLQIQGERLA GATLRAVLGD NNGIAGNATY
HWYVEGQAIE GATESILYLG SELVGKTITA TASYTDYDEY SESPSATTSH IATSIVSSEQ
ELVAALASAS NGEWIALASG EYANMAEIAI ANGVTLTAGQ DGDAVISGAT CIELSGNQSG
LVGLTFDNLS PLFGSACDDN NKLNSVWVSG DNVTVSHNRF LGHAEDLGSV AEYNYVYLRG
SYNVIERNVF SGKNLDIKGA AVSVYNKGDG SEGGHVVQYN LFKDMPGTSV QSSAYALQVG
RSTGSDGLGE GQHVVRFNRF DNVMADRRII KVQASRSSVY GNTIVNSTGG ISLEDGYENT
VSNNVILSAG DNSDDSGIMF SPFGHTVTGN YIAGLKTTSS QRAALLLNTE TVANSGNSAL
SVSRVTVANN TVINSNNAIA TYTGSKCVAD TFVASFENNL VANGVAGQGA NGADSYAFDN
GCAINSLESN FSNETYFASG ADLVPLAGSA GEATLVATAN GLLNDANSLA GANASALIVL
SELDVGPGSS FVQPVAGAYN GALNLDFTHW YITFPSGDAQ YNPQWLLDGY TSENEFYYDA
DGAAVFKTPN IAGTTSANTK YSRTELREMM RGPEQSPKPA DWPSTQGINK NNWVFSNSYQ
RVQYEAGGVD GVMEATLKVD HVSTTVTEGY EYMMGRVIVG QIHASDDEPF RLYYRKLPGN
SLGSVYFATE VPGLGDNRYD MIGDSKEDSP NPLDGIALGE VWSYRVEAKG DDLTVTIMRE
GKPDVTRTVK TAAAYANDWM YFKAGVYNQN NGGDPSDYAQ ATFYSIVVSH DAPPVEPGNG
EDEGNGGTTT EVTDGPSLQT AILAASAGDT IEIGAGDYAN MGTVVVTDGV TITRAEGSNA
VISGEFCLQV SGDGARITGL EFADLIVPAD SANHCRSNGD GNIVITGDDV VFDHNLLSGD
AEFPTPVDDD DHNWLVLKGS NALVERNTFQ NRRGIAADGV SQVRGGFISI YVNGSATGNT
VQYNLFKDML LNDQSTAYAI MLGRTTGLDS MLDGFNTIQY NRFDNIDSKT RVIRVQGSSN
TISHNTVVNS QGMLALESGQ NNVVSYNVIL PSGTDSNDGG ISAAPYGHTI VGNYIAGSNT
TSSERGAIYL NNDVDEPGNL AATPSAVEIA GNTIINSKQP IHIGAKGCEV GPAFIANFSN
NLIANGVSGV SEFYEGAPVS GRAAIRYSCE LDPAHSFTGE AYFSDLLYNT SGAYGGGLWF
DAASTFGYDG EATLIAGENG LIEATGSLAG KGAPSNSLVV VEETDVGVGS ATNF
|
|---|
| |