23 homologs were found in PanDaTox collection
for query gene Avi_5039 on replicon NC_011988
Organism: Agrobacterium vitis S4



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011988  Avi_5039  ABC-type sugar transport system, periplasmic component  100 
 
 		 364 aa  734    Agrobacterium vitis S4  Bacteria  normal  0.797463  n/a   
 
 
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NC_011368  Rleg2_4516  putative sugar ABC transporter, substrate-binding protein  77.81 
 
 		 365 aa  574  1.0000000000000001e-163  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.112183  normal  1 
 
 
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NC_012854  Rleg_6409  putative sugar ABC transporter, substrate-binding protein  77.26 
 
 		 365 aa  556  1e-157  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.000000237151  normal  0.403501 
 
 
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NC_008786  Veis_2711  putative sugar ABC transporter, substrate-binding protein  58.81 
 
 		 369 aa  434  1e-120  Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  0.210601 
 
 
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NC_012791  Vapar_3345  putative sugar ABC transporter, substrate-binding protein  62.54 
 
 		 373 aa  422  1e-117  Variovorax paradoxus S110  Bacteria  normal  0.643163  n/a   
 
 
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NC_008309  HS_0765  ABC-type sugar-binding periplasmic protein  53.19 
 
 		 369 aa  372  1e-102  Haemophilus somnus 129PT  Bacteria  normal  0.234513  n/a   
 
 
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NC_013421  Pecwa_3887  hypothetical protein  50.14 
 
 		 366 aa  354  1e-96  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_012917  PC1_3690  hypothetical protein  50.14 
 
 		 366 aa  354  2e-96  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009832  Spro_3931  hypothetical protein  51.09 
 
 		 366 aa  350  3e-95  Serratia proteamaculans 568  Bacteria  normal  1  normal  1 
 
 
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NC_009484  Acry_1595  ABC-type sugar transport system periplasmic component-like protein  44.54 
 
 		 368 aa  308  9e-83  Acidiphilium cryptum JF-5  Bacteria  normal  0.32236  n/a   
 
 
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NC_010623  Bphy_5185  putative signal peptide protein  47.04 
 
 		 377 aa  302  5.000000000000001e-81  Burkholderia phymatum STM815  Bacteria  normal  0.296404  normal  0.0737238 
 
 
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NC_003296  RS02363  signal peptide protein  45.79 
 
 		 366 aa  300  3e-80  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  0.0272231 
 
 
-
 
NC_008709  Ping_1312  ABC transporter substrate-binding protein or LacI-type transcriptional regulator  46.57 
 
 		 357 aa  287  2e-76  Psychromonas ingrahamii 37  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_3830  hypothetical protein  39.76 
 
 		 344 aa  211  1e-53  Pseudomonas mendocina ymp  Bacteria  normal  0.985949  normal  1 
 
 
-
 
NC_008699  Noca_0806  ABC-type sugar transport system periplasmic component-like  25.08 
 
 		 398 aa  63.5  0.000000006  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_0679  ABC-type sugar transport system periplasmic component-like  27.19 
 
 		 387 aa  62.4  0.00000001  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
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NC_008541  Arth_1810  ABC-type sugar transport system periplasmic component-like protein  22.64 
 
 		 388 aa  57.4  0.0000004  Arthrobacter sp. FB24  Bacteria  normal  0.0233725  n/a   
 
 
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NC_008699  Noca_0604  ABC-type sugar transport system periplasmic component-like  23.96 
 
 		 391 aa  57  0.0000005  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_2342  ABC-type sugar transport system periplasmic component-like protein  23.1 
 
 		 378 aa  52  0.00002  Conexibacter woesei DSM 14684  Bacteria  normal  0.759463  normal  0.08592 
 
 
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NC_008699  Noca_0099  ABC-type sugar transport system periplasmic component-like  21.1 
 
 		 400 aa  48.9  0.0001  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
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NC_013205  Aaci_2277  periplasmic binding protein/LacI transcriptional regulator  25.18 
 
 		 321 aa  47.4  0.0004  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.455143  n/a   
 
 
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NC_008699  Noca_0588  ABC-type sugar transport system periplasmic component-like  21.04 
 
 		 390 aa  46.6  0.0007  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_2362  ABC-type sugar transport system periplasmic component-like protein  24.38 
 
 		 380 aa  42.7  0.009  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  0.0310858 
 
 
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