63 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Sdel_0020  CDS  NC_013512  19797  21416  1620  nickel ABC transporter, periplasmic nickel- binding protein  YP_003303093  decreased coverage  0.00232018  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0149  CDS  NC_013512  137686  139542  1857  proton-translocating NADH-quinone oxidoreductase, chain L  YP_003303222  decreased coverage  0.000427063  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0159  CDS  NC_013512  149942  150910  969  molybdenum cofactor biosynthesis protein A  YP_003303232  decreased coverage  0.000610838  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0185  CDS  NC_013512  173216  174007  792  acyl-(acyl-carrier-protein)--UDP-N- acetylglucosa mineO-acyltransferase  YP_003303258  decreased coverage  2.5878e-07  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0243  CDS  NC_013512  227946  228545  600  septum formation inhibitor  YP_003303316  decreased coverage  4.18396e-05  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0244  CDS  NC_013512  228542  229426  885  UDP-3-0-acyl N-acetylglucosamine deacetylase  YP_003303317  decreased coverage  2.07382e-05  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0277  CDS  NC_013512  264823  265320  498  hypothetical protein  YP_003303349  decreased coverage  0.000871459  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0355  CDS  NC_013512  338907  339284  378  ribosomal protein S12  YP_003303427  decreased coverage  7.59048e-08  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0356  CDS  NC_013512  339358  339828  471  ribosomal protein S7  YP_003303428  decreased coverage  1.14638e-07  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0357  CDS  NC_013512  339910  341988  2079  translation elongation factor G  YP_003303429  decreased coverage  1.42734e-05  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0377  CDS  NC_013512  361408  363393  1986  Nitrate and nitrite sensing domain protein  YP_003303449  decreased coverage  0.000413313  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0378  CDS  NC_013512  363577  364173  597  Superoxide dismutase  YP_003303450  decreased coverage  0.000638563  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0395  CDS  NC_013512  379417  381402  1986  succinate dehydrogenase or fumarate reductase, flavoprotein subunit  YP_003303467  decreased coverage  6.51077e-05  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0396  CDS  NC_013512  381399  382121  723  succinate dehydrogenase and fumarate reductase iron-sulfur protein  YP_003303468  decreased coverage  1.58386e-06  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0534  CDS  NC_013512  518903  519262  360  zinc finger DksA/TraR C4-type  YP_003303606  decreased coverage  7.81364e-08  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0612  CDS  NC_013512  600951  601784  834  hydroxymethylbutenyl pyrophosphate reductase  YP_003303683  decreased coverage  5.13749e-07  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0613  CDS  NC_013512  601850  603526  1677  RNA binding S1 domain protein  YP_003303684  decreased coverage  6.20529e-06  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0700  CDS  NC_013512  696336  697292  957  Polysulphide reductase NrfD  YP_003303770  decreased coverage  3.75278e-07  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0701  CDS  NC_013512  697295  697966  672  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_003303771  decreased coverage  2.05743e-07  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0708  CDS  NC_013512  705808  708183  2376  cytochrome c assembly protein  YP_003303778  decreased coverage  0.00145615  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0728  CDS  NC_013512  727617  728132  516  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_003303797  decreased coverage  8.60866e-06  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0729  CDS  NC_013512  728129  729076  948  WD-40 repeat protein  YP_003303798  decreased coverage  6.25497e-06  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0851  CDS  NC_013512  848096  849394  1299  peptidase M16 domain protein  YP_003303917  decreased coverage  4.60101e-05  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0897  CDS  NC_013512  891917  892639  723  CRISPR-associated protein Cas6  YP_003303963  decreased coverage  1.04953e-05  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0898  CDS  NC_013512  892961  894664  1704  hypothetical protein  YP_003303964  decreased coverage  0.0001044  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0943  CDS  NC_013512  943837  944658  822  IstB domain protein ATP-binding protein  YP_003304008  decreased coverage  1.60717e-05  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0944  CDS  NC_013512  944772  945050  279  hypothetical protein  YP_003304009  decreased coverage  3.62308e-06  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0945  CDS  NC_013512  945210  945656  447  hypothetical protein  YP_003304010  decreased coverage  6.36619e-06  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0969  CDS  NC_013512  972239  974368  2130  cell divisionFtsK/SpoIIIE  YP_003304033  decreased coverage  0.00536136  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0970  CDS  NC_013512  974388  976949  2562  aconitate hydratase 2  YP_003304034  decreased coverage  4.20214e-05  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_0976  CDS  NC_013512  981990  982604  615  regulatory protein TetR  YP_003304040  decreased coverage  0.00018682  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1027  CDS  NC_013512  1046642  1047871  1230  argininosuccinate synthase  YP_003304087  decreased coverage  0.00571105  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1067  CDS  NC_013512  1086502  1087734  1233  sodium:dicarboxylate symporter  YP_003304127  decreased coverage  6.77504e-05  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1087  CDS  NC_013512  1104972  1106147  1176  succinyl-CoA synthetase, beta subunit  YP_003304146  decreased coverage  2.60623e-05  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1119  CDS  NC_013512  1138213  1138752  540  Antirestriction ArdA family protein  YP_003304177  decreased coverage  1.26286e-07  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1188  CDS  NC_013512  1204450  1205469  1020  cobalamin synthesis protein P47K  YP_003304246  decreased coverage  0.0038044  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1189  CDS  NC_013512  1205509  1206639  1131  aminotransferase class I and II  YP_003304247  decreased coverage  0.00616768  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1190  CDS  NC_013512  1206626  1207096  471  peptidylprolyl isomerase, FKBP-type  YP_003304248  decreased coverage  0.00107243  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1256    NC_013512  1271323  1271913  591      decreased coverage  7.02737e-05  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1289  CDS  NC_013512  1305600  1307450  1851  arginine decarboxylase  YP_003304344  decreased coverage  0.00657697  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1310  CDS  NC_013512  1325567  1327918  2352  hypothetical protein  YP_003304365  decreased coverage  0.000596216  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1430  CDS  NC_013512  1447415  1448236  822  modification methylase, HemK family  YP_003304483  decreased coverage  0.000467016  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1448  CDS  NC_013512  1467164  1467781  618  hypothetical protein  YP_003304501  decreased coverage  1.74999e-06  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1449  CDS  NC_013512  1467778  1468560  783  hypothetical protein  YP_003304502  decreased coverage  2.5878e-07  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1462  CDS  NC_013512  1483304  1484635  1332  potassium uptake protein, TrkH family  YP_003304515  decreased coverage  5.05239e-05  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1475  CDS  NC_013512  1496141  1498864  2724  aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein  YP_003304528  decreased coverage  0.00314966  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1510  CDS  NC_013512  1535077  1535772  696  hypothetical protein  YP_003304561  decreased coverage  2.74291e-07  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1511  CDS  NC_013512  1535785  1536255  471  tRNA/rRNA methyltransferase (SpoU)  YP_003304562  decreased coverage  1.18005e-07  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1776  CDS  NC_013512  1805186  1806523  1338  hypothetical protein  YP_003304826  decreased coverage  0.00028021  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1836  CDS  NC_013512  1863863  1864093  231  acyl carrier protein  YP_003304886  decreased coverage  5.76824e-07  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1844  CDS  NC_013512  1874041  1874823  783  extracellular solute-binding protein  YP_003304894  decreased coverage  0.000362453  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1861  CDS  NC_013512  1894498  1895136  639  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_003304911  decreased coverage  6.13847e-06  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1862  CDS  NC_013512  1895136  1897076  1941  NADH/Ubiquinone/plastoquinone (complex I)  YP_003304912  decreased coverage  3.07213e-06  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1884  CDS  NC_013512  1916649  1918043  1395  RND efflux system, outer membrane lipoprotein, NodT family  YP_003304934  decreased coverage  0.0017284  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1900  CDS  NC_013512  1934329  1935129  801  hypothetical protein  YP_003304950  decreased coverage  8.08161e-05  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1970  CDS  NC_013512  1986560  1987633  1074  hypothetical protein  YP_003305020  decreased coverage  8.26676e-07  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_1985  CDS  NC_013512  2001671  2002696  1026  Protein-glutamate methylesterase  YP_003305035  decreased coverage  0.0052895  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_2020  CDS  NC_013512  2034215  2035450  1236  protein of unknown function DUF214  YP_003305069  decreased coverage  6.19382e-06  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_2060  CDS  NC_013512  2068486  2069274  789  formate dehydrogenase family accessory protein FdhD  YP_003305107  decreased coverage  8.63556e-05  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_R0009  tRNA  NC_013512  324912  324987  76  tRNA-Thr    decreased coverage  5.17155e-08  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_R0010  tRNA  NC_013512  325043  325127  85  tRNA-Tyr    decreased coverage  4.73639e-08  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_R0011  tRNA  NC_013512  325130  325206  77  tRNA-Gly    decreased coverage  4.46743e-08  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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Sdel_R0012  tRNA  NC_013512  325349  325423  75  tRNA-Thr    decreased coverage  5.12028e-08  n/a    Sulfurospirillum deleyianum DSM 6946  Bacteria 
 
 
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