20 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
PICST_12953  CDS  NC_009042  2176483  2177205  -  723  predicted protein  XP_001383180  decreased coverage  0.000550926  normal  0.10545  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_16270  CDS  NC_009042  2486946  2488982  +  2037  conserved hypothetical protein  XP_001382705  decreased coverage  0.000103062  normal  0.0590596  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_29938  CDS  NC_009042  1546427  1548349  -  1923  predicted protein  XP_001383069  decreased coverage  0.00383376  normal  1  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_30273  CDS  NC_009042  2421665  2422042  -  378  predicted protein  XP_001383216  decreased coverage  0.00180649  normal  0.873311  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_34770  CDS  NC_009042  75458  78061  -  2604  Mitochondrial respiratory chain complexes assembly protein RCA1 (TAT-binding homolog 12)  XP_001382776  decreased coverage  0.00577984  normal  0.0143281  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_34802  CDS  NC_009042  215253  216914  +  1662  putative permease  XP_001382277  normal  1  decreased coverage  0.0082411  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_34848  CDS  NC_009042  435200  437215  -  2016  predicted protein  XP_001382847  decreased coverage  0.00044083  normal  1  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_40727  CDS  NC_009042  2267508  2272436  -  4929  nucleoporin  XP_001383190  normal  1  decreased coverage  0.0074687  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_41967  CDS  NC_009042  2146974  2147708  +  735  predicted protein  XP_001382637  decreased coverage  0.00407294  normal  0.0529872  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_42423  CDS  NC_009042  633953  636295  -  2343  predicted protein  XP_001382884  normal  1  decreased coverage  0.00348392  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_42612  CDS  NC_009042  456561  459458  +  2898  Gdp-GTP Exchange Protein (GEP) for the Rho1p Small GTP-binding Protein  XP_001382323  normal  0.019797  decreased coverage  0.00259781  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_54201  CDS  NC_009042  504742  506343  +  1602  alpha 1,2 mannosyltransferase  XP_001382332  decreased coverage  0.000103091  normal  1  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_55476  CDS  NC_009042  84568  86082  -  1515  predicted protein  XP_001382777  normal  1  decreased coverage  0.000353399  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_56077  CDS  NC_009042  417764  419584  +  1821  transmembrane protein  XP_001382315  decreased coverage  0.00164945  normal  1  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_56204  CDS  NC_009042  2246267  2246734  +  468  mitochondrial protein required for iron metabolism  XP_001382658  decreased coverage  0.00663921  normal  1  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_56448  CDS  NC_009042  2148043  2148690  -  648  Second and third steps of methylation pathway for phosphatidylcholine biosynthesis  XP_001383176  decreased coverage  0.000744789  normal  0.048662  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_622  CDS  NC_009042  2355255  2358281  -  3027  CAT8 controls the key enzymes of gluconeogenesis  XP_001383208  decreased coverage  0.00677411  normal  0.437282  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_66830  CDS  NC_009042  506405  507937  -  1533  26S proteasome regulatory subunit  XP_001382856  decreased coverage  0.0000427133  normal  1  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_67099  CDS  NC_009042  2343877  2345126  -  1250  hypothetical protein  XP_001383204  decreased coverage  0.0000634567  normal  0.0803186  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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PICST_87591  CDS  NC_009042  2506042  2506787  -  746  dolichol-P-mannose synthesis  XP_001383237  normal  1  decreased coverage  0.00511018  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
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