| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_40727 |
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| Symbol | NUP188 |
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| ID | 4837177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 2267508 |
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| End bp | 2272436 |
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| Gene Length | 4929 bp |
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| Protein Length | 1642 aa |
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| Translation table | 12 |
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| GC content | 40% |
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| IMG OID | 640388492 |
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| Product | nucleoporin |
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| Protein accession | XP_001383190 |
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| Protein GI | 150864400 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0074687 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCAGTTA CGTCGGGCCA GCTTGTAGTA CAGCAATCGG TATTGCCTTT GAAACCGATT
CAGCCGACGC AATTCTGGAC TTTTCCCAAT GCGCTTTCAC TCATCAAAAC TCCCAACAAC
ATCTACATCG CCGATGCTCT CGATGAGTTT CTTCTTTCCA ACAAGGACAT CATTTTAAAT
CCGGACGTTT TCAAAAGCTC GAATTCGGAA CCAATTAAGA AGCCACTTAA ACAGCTTTCC
CTAAGAAATG TGCTCTACTC AGATATTTCC GCCAAAATCG TTGATGATGC CGAGAAGCTC
GAGTCCATTC TCAAGTTGGA CATTGTAGAA ATTGTCCGAA TCGTCTCACA GACGGCGAAA
AGAACCCCAG AAAAAAAATT GCATAACTCT GAGAAGCTCA AGAGCAAGTT GCCCGACGAT
CGACAGCGCT TTTTAGAAAA TGAGCGGCTT TTGCTCAACA CGAGTAACAT TTTAGTAGAA
CGCAGAACTG TACTCAAACT CGTGATAGAA CTTGTCAACT CCATCAACAG ACCGTCTGCT
TCGGAAGTGA TCCAGAACTT TGGAAAGGAT ATCTTCCTCT CTTCCACGTA CGTTGTTAAT
GTAATTGAGG CTTTGGATAA ATCGTTGGCA GTGTTGTCGT CCAGATCATA CGAATCAGGA
ATATCGCCCG AATTGGACGA GTTGATCTAC AGAGAGACTA TACTCTTCTC GATTCAATTA
GTGAAGGTCT TGACAGAACT AGTATCAGGA CCATACCTCA AGAACAACAC GACTACCAAA
GCATGGTTCG ATCTCATGAA GTCTACCAAC TTCTTGTTCA ACTTTGGTCC ATACATAAAG
TACCAAGAAT CATTCAATTT GTTACAGGGT CTAGCTACTA CTGTCTCGAT CTTATTCTTG
GACTTGATAG AAACGTACGA TCTGGTAGAA GACAACGAGA AACTGTCGTC TTCGTATATT
AATGACGTGG CGATATTTTG CAGTATCAAC GATGCCATCA CGAATGAGTC CAACGACAAC
TCTGTAGTCT TATACTCATG GTTGATCATA TCCATGAGAA AGTTCTATTT TCTTCAAGAA
CATTCAGCTA TTGAGTCGTC CAAAACGTTC TTGAACAGCT TCAGTCTCGA GAAATTGGAC
TCTACTATAG CCAATTTGAG TCTCAGGGCA GCAGAATTGA ACGTATTCTC CAATTTGACA
AAAGTCAATG AACTTCTAAA GTTCGATAGC TTGCATTCTT CAATTTTGTC AACAGTCGTA
ATCTCAGCCA TGCCATTGAT CGAGTCCATA ACTCCCGAAA TTGCAACTTG TATCCAAAGC
ATCTTACAAA ATTGCCCTAA TAGCATCGTC GAAAGATTCT TCGACAACGA ATTTACGGTG
AATCATATCA TTTTAGCGAG AGCAAAGTTT CCTTTAGCAT TCGCTCCATA TTTGCAAATT
GCTTCTGTCA ATGGGAATTT CGCATTCGAA GAATTCAGCG AGTTAAAATC ATATATTCAA
CTATTCAAAA AGGAAGAGTT CGGCAAACTT TACCAGATAG ACGATACCAA TACTGAACTT
GTCAAATTGA CCAAGTATTT GGACATTTTT CCACCTTACG AATATAACAA AAAGCTCTCC
TTGATGCTCA CTGAAGGAAC AAAGGCTATA ATGCTCCCTG CAACCAACAG CGATGAGATT
TTAGTCAACT TCTTGTACAA ATACAACGGC TGGGCTCTAC TTGGAAGAAT ATTGCAAAAT
GTGTCCAAGT TCTTCACGAC ATCTGATGAT GAAAAAGTCA ACGTTGTAGT ACTTATCATC
AAGTCTATTA CCCAAGTCAC AATAGATGGT AGCATAGAGC AAGTCAAAGA AGTTCTTGAT
TTCATGTCTA CTTATACTGA CGATTCAGAT ATACTTGAAG TCATTTTGAG ACTATTGGAA
CAAGGGTTGC ATTCACGAAA CGTACGTGTA TTGGAAGCCG TACTTGATTT GGTTACCAAA
TTGATGCCTT TCTTATCGTA CAGAATATGG CCCTACTTGT CTAAATCAGT ATTGTTATCT
CATAACGGAA AGGAAGGATT TGCTGCTACC ATTTTTGGTG CCATAGAAAT GGTTAACGGG
GACTACAATT TCACTATATC GTTGGTCAAG CTTACAGACG CGTTGGTTCA AAACTGTCTC
TCGCTAAATG AAGACTACCC GAAGAAGTCT AAGAGCTTCA TCTTATCGAA GTTTATTAAT
CATTTGGTGT CTGTATTTGA ATGTTTCACG TATTGTAGAT TCAACCACCC ATATCAAAAG
CTTGAACTAG GTGTCTCGAT GTTGGATGTG TTATCCAATG TCTTGAACTA TACATATGGA
GTTCATGGTG AGTTGAAGGA CAAGGTTACA AATGTGTTTT CTGAGTCTTC AACTTGTATT
TTGGATTCTT TCCTTGTTTC TGGTGACGAT TTTTCCAGAT CAGTGGCTCC GATCTTGTCT
ATGGTAGATT CTCTAGCATC CAATATCAAT CTATACGAAG TAAGCGATAT TTCTGGATTT
TACTATGACA GTTGGATACG GGGAGCATTG TCGTTTTCGC AATTGATTGT CGAAATAAGA
TCTGTTTTAA ATCTTCCTCC GTCTGCATTT GAGAAGAGCT TATTTGGTAG GTTGCCAAAG
TTGGTTTCCA CCTATTCGCA GTATGCTAGT TTGCGAAGTA GTGTATTGGA CGTGATAACA
GCTTTGACTA ATGGAATCTG GCCAGACAAC ACAAAGCCAT CGTTGTTATC CCATTTGGGT
CGTGATAACG CTCAAGTGTT GTTACATTCC TTAGCTGTCG ACTTGGACAA CTCGTTTGAT
AACTACAAAT TGAAAATTTC CTTATATGAC TTCATTTGTG CTGTCATGGA AGGTAACCAG
GAGGGTTTGT CGGTGCTTTT TATAAGCGGA AGAGACGTTT TTGGAGATTT TACAAAGAAA
GGGGACGAGG CAGAAGATCA GAAACCAATT TCTTTGTTGC AGATCTTGAA AAAGAACATC
CGTGACATCA ACTACTATCC CAATTTTGTA GGCCTCCACC TTGTTGATGC AATTTCCCTA
GCATCTAACT CATGGACTAC TGCTAGAGAG AATGAAAATG ATATTGAATT TATTGACGAA
TTGATTTCAA AAATTCAAGT TACAATTGAC GAGAAACCAC AAACAGTTGA TGACTATATC
AGCAGATGCT ATTCAGAAAA GTTGGTTTCC AAAATCGCCC AGATTCTTTC CTTGTTCCTC
TACACGTCCA GAAATGAAAA TTGCAAGAAG AATATCATTA ACTTGTTGAC AAGTGATTCT
TTCTTGAAGG TTGCAAAGAG CAAATTTGCC ATAAAAGATT ACCAGCCTGC TTTACATTCA
AACTTGCAAG TGTCGTTTGA GAATGCATTC CCAGGTTTCA AGTTGTCGCA GTTTACAAGC
GTCTTCACCA AGAGAAATAG ATTCGGAACT TCTGCTGTGT ACAATTTAGC TCTCATGGAC
AGACTCTTCC AAAATCAGAA AGCCTGGCCA CTTCTCAGAG AGGATATTAT TTCTGCAAGT
GTAAACTTGC AGTATCTTGA ATCTCAAATT TCAAGTGCAA AGTCGTTTGG AGCTTTATTG
ACTGCTTATT GTAGAAGATT CGGTGGTGAA TTGTCGGGCT CGAAAATCTT GGAGTTCACC
TCCCATCTTT TGAAGCTTAA CATTACAGAG GGTATTCCGG CTGAATTGTT TGAGCAAATC
TACCACGAGA GAATTGAACT TGCCTTCTTC TTGATGTATT CCATCTACAA GAACTCTGAA
ATTAAAAAGG ACCCCGTCAT TGTCTTTGAG ATTGTTAAGA ACTCATCTGA ATTGTTGTCT
TCTCCAAGCA TGAATTTCCT TGTCGCATTG GCAGAATCTT CTGGTTACTA TAGACCTTTG
CTCAGAATAC TATTTTGTTC ATTGAACTTG ATTAAGGACG AATTTGGTAT TCTTCTTGAG
TATTTCAGTG TCTTCCGTGA TCTCTTTGGC TTAATTGTCA CTAAGGGCAC CCGAACCTTG
TTAATTGAGT TGCAGAACGA TGTCTACTTA TCGCGCACCA ACAAGAACCA CAAGTCTACC
AAGATGAATG AAAGAATAGA TGATTTGATG ATCATCTTAT CCCTCTTAAA AGTCTTTGTG
AAAATGAAGT CATCTCCTAA TTTGCACCAA GAGATGGCTA CTTTGGTCAA TGATGATGGT
ACTATCAAAT CTTTGTTCAA CCTCTACTCT TTCTCTCATT CGATAGAAGT CAATGATGAA
CACATATTTG CACAGTTGAG TTTGATGTTT ATCCAAGAGT TGATGGAGAT CGAAATTATT
GCTGAGAAGA TGGTATCGGA GGGACTTTTC GTGGTCATTG TAGAGAGTCC TATTTCCAGT
CCAATTAGAG CTGGATCAAC CAGTGTAGCA TCTGGAGCAC AGTATCATTC CATCTGGACC
AACGGTATCT TGCCTATCAT CATCTCCAGT TTGCACAAAC TTGGTCCTAG TGTTATTGCT
GAGGTTTGTG TGGCATTGCA GTTGTTTGGA AAGCAGATCG AGTCTTGTAT CGAAAGCTGG
GCTAAAGATT CATCTACTAT CAGAATTTCG ACGTCAACCG TAGCTGAAAC CAGTCAGATC
TTACTTATCT ACCAACTGCT TGTATCTATG AACGTAGGTG AATATTTGAA CGAGTCTGGT
GCTGTTGAAG GCGTTGATGT TGAAGTGATA GATATGAAAG TTCTTCCCGG GTTAAGCAGT
GAATCGAAGA GAGACGAGTT TGTGGACTGT CTCAACAACT TATTGAAGCA TCCTAAGTTC
TTGACGTCGA GAGTAGCTCC AAGCTCTATC GACGAACATC GTATTATAAA GAAGGGTGGT
AAGGACTACG ACAACTTTGT CAACGAACTT ATCCAGGAAA TTCGTGATTT GAAGGATTTC
CTCAACTAG
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| Protein sequence | MPVTSGQLVV QQSVLPLKPI QPTQFWTFPN ALSLIKTPNN IYIADALDEF LLSNKDIILN
PDVFKSSNSE PIKKPLKQLS LRNVLYSDIS AKIVDDAEKL ESILKLDIVE IVRIVSQTAK
RTPEKKLHNS EKLKSKLPDD RQRFLENERL LLNTSNILVE RRTVLKLVIE LVNSINRPSA
SEVIQNFGKD IFLSSTYVVN VIEALDKSLA VLSSRSYESG ISPELDELIY RETILFSIQL
VKVLTELVSG PYLKNNTTTK AWFDLMKSTN FLFNFGPYIK YQESFNLLQG LATTVSILFL
DLIETYDSVE DNEKSSSSYI NDVAIFCSIN DAITNESNDN SVVLYSWLII SMRKFYFLQE
HSAIESSKTF LNSFSLEKLD STIANLSLRA AELNVFSNLT KVNELLKFDS LHSSILSTVV
ISAMPLIESI TPEIATCIQS ILQNCPNSIV ERFFDNEFTV NHIILARAKF PLAFAPYLQI
ASVNGNFAFE EFSELKSYIQ LFKKEEFGKL YQIDDTNTEL VKLTKYLDIF PPYEYNKKLS
LMLTEGTKAI MLPATNSDEI LVNFLYKYNG WALLGRILQN VSKFFTTSDD EKVNVVVLII
KSITQVTIDG SIEQVKEVLD FMSTYTDDSD ILEVILRLLE QGLHSRNVRV LEAVLDLVTK
LMPFLSYRIW PYLSKSVLLS HNGKEGFAAT IFGAIEMVNG DYNFTISLVK LTDALVQNCL
SLNEDYPKKS KSFILSKFIN HLVSVFECFT YCRFNHPYQK LELGVSMLDV LSNVLNYTYG
VHGELKDKVT NVFSESSTCI LDSFLVSGDD FSRSVAPILS MVDSLASNIN LYEVSDISGF
YYDSWIRGAL SFSQLIVEIR SVLNLPPSAF EKSLFGRLPK LVSTYSQYAS LRSSVLDVIT
ALTNGIWPDN TKPSLLSHLG RDNAQVLLHS LAVDLDNSFD NYKLKISLYD FICAVMEGNQ
EGLSVLFISG RDVFGDFTKK GDEAEDQKPI SLLQILKKNI RDINYYPNFV GLHLVDAISL
ASNSWTTARE NENDIEFIDE LISKIQVTID EKPQTVDDYI SRCYSEKLVS KIAQILSLFL
YTSRNENCKK NIINLLTSDS FLKVAKSKFA IKDYQPALHS NLQVSFENAF PGFKLSQFTS
VFTKRNRFGT SAVYNLALMD RLFQNQKAWP LLREDIISAS VNLQYLESQI SSAKSFGALL
TAYCRRFGGE LSGSKILEFT SHLLKLNITE GIPAELFEQI YHERIELAFF LMYSIYKNSE
IKKDPVIVFE IVKNSSELLS SPSMNFLVAL AESSGYYRPL LRILFCSLNL IKDEFGILLE
YFSVFRDLFG LIVTKGTRTL LIELQNDVYL SRTNKNHKST KMNERIDDLM IILSLLKVFV
KMKSSPNLHQ EMATLVNDDG TIKSLFNLYS FSHSIEVNDE HIFAQLSLMF IQELMEIEII
AEKMVSEGLF VVIVESPISS PIRAGSTSVA SGAQYHSIWT NGILPIIISS LHKLGPSVIA
EVCVALQLFG KQIESCIESW AKDSSTIRIS TSTVAETSQI LLIYQSLVSM NVGEYLNESG
AVEGVDVEVI DMKVLPGLSS ESKRDEFVDC LNNLLKHPKF LTSRVAPSSI DEHRIIKKGG
KDYDNFVNEL IQEIRDLKDF LN
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