Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_66830 |
Symbol | RPT3 |
ID | 4837078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009042 |
Strand | - |
Start bp | 506405 |
End bp | 507937 |
Gene Length | 1533 bp |
Protein Length | 410 aa |
Translation table | 12 |
GC content | 42% |
IMG OID | 640388393 |
Product | 26S proteasome regulatory subunit |
Protein accession | XP_001382856 |
Protein GI | 126132662 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1222] ATP-dependent 26S proteasome regulatory subunit |
TIGRFAM ID | [TIGR01242] 26S proteasome subunit P45 family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000427133 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GATTACACTG TTGTTTCATT TCATTTACGT GTTGATATTC TTGATTTTGT TAACATAGTC GGAATCAATA GTGTTGTCTT TATAAAGTAC ACAAAAGGTT GTAAGTATTA CTGACATTAC TGTGGTGATT ACTATTAGAA TACAATAATA TCTATTCGTT TCTGTTGCTG ATTTTTCATT CATATTTCTC AATAATATCT TCATATTTCA TACATTTTTC CAAATAATCA GTTTCTATCA TAGTCAATTG CCGTAATGGA AGAACCCGTC ATTTTCGAAT CCGCTAATTT GACTGCTCCC TTCAGCAAAC ACAAGTCACA AATAGAAGAC AGCTCTGACT CCTACTTGAA GTTAAAGAAG TTAGAAAAGG AGTTGGACCT CTTGCTCTTG CAGGAAGATT ACATCAAAGA TGAACAGCGC CACTTGAGAA GAGAGTTGGT GAGAGCTCAA GAGGAAGTCA AGAGAATCAA GTCTGTTCCT TTAGTGATTG GTCAGTTCTT GGAACCTATT GATGAGAACA CAGGCATTGT TTCTTCGACT ACTGGCTCCA ACTATGTAGT GAGAATCTTG TCGACATTGG ACAGAGAATT GTTGAAGCCA TCGTCTTCTG TAGCTTTGCA TCGTCACTCC AACGCGTTAG TAGATATCTT GCCTCCTGAA GCTGACTCAT CAATTTCCAT AGTTGGTGAC GACCAGAAGC CAGATGTCAC CTACGCCGAC GTTGGTGGTT TGGATATGCA GAAGCAGGAA ATCAGAGAAG CTGTAGAGTT GCCCTTGACC CAGGGTGACT TGTATTCGCA AATTGGTATC GATCCACCAA GAGGTGTCTT GTTATACGGT CCCCCAGGAA CAGGGAAGAC CATGTTAGTC AAAGCTGTGG CCAACTCGAC CACAGCATCG TTTATCCGTA TCAACGGTTC AGAGTTCGTC CAGAAATACT TAGGTGAGGG GCCTAGAATG GTCAGAGATG TGTTCCGATT GGCCAGAGAA AACTCGCCCG CCATTATTTT CATAGATGAA ATAGATGCCA TTGCGACAAA GAGATTCGAC GCTCAGACGG GGGCCGACAG AGAAGTTCAG AGAATCTTGT TGGAGTTATT GAACCAGATG GATGGCTTTG ATCAGACGTC TACAGTAAAG GTCATCATGG CCACTAATAG AGCAGACACA TTGGATCCAG CCTTGTTGAG ACCTGGAAGA TTGGACAGAA AAATCGAATT CCCTTCGTTG AAAGACAGAA GAGAAAGAAG ACTCATCTTT TCCACCATTG CCTCCAAGAT GTCGTTGGCT CCGGAAGTCG ACTTGGACTC GTTGATCATC AGAAATGATC CCTTGTCCGG TGCCGTCATC GCTGCCATCA TGCAAGAAGC TGGCTTGAGA GCCGTAAGAA AGAACAGATA CATGATCTTG CAAAGTGACT TGGAAGAAGC TTACACTTCT CAAGTTAAAA CTGGTAGTGA ACACGATAAG TTCGACTTCT ACAAGTAGAC TTGGTCTTTG TATATTATCA TTAATGCAAA AAATATCAAA CGT
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Protein sequence | MEEPVIFESA NLTAPFSKHK SQIEDSSDSY LKLKKLEKEL DLLLLQEDYI KDEQRHLRRE LVRAQEEVKR IKSVPLVIGQ FLEPIDENTG IVSSTTGSNY VVRILSTLDR ELLKPSSSVA LHRHSNALVD ILPPEADSSI SIVGDDQKPD VTYADVGGLD MQKQEIREAV ELPLTQGDLY SQIGIDPPRG VLLYGPPGTG KTMLVKAVAN STTASFIRIN GSEFVQKYLG EGPRMVRDVF RLARENSPAI IFIDEIDAIA TKRFDAQTGA DREVQRILLE LLNQMDGFDQ TSTVKVIMAT NRADTLDPAL LRPGRLDRKI EFPSLKDRRE RRLIFSTIAS KMSLAPEVDL DSLIIRNDPL SGAVIAAIMQ EAGLRAVRKN RYMILQSDLE EAYTSQVKTG SEHDKFDFYK
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