Gene PICST_66830 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_66830 
SymbolRPT3 
ID4837078 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp506405 
End bp507937 
Gene Length1533 bp 
Protein Length410 aa 
Translation table12 
GC content42% 
IMG OID640388393 
Product26S proteasome regulatory subunit 
Protein accessionXP_001382856 
Protein GI126132662 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1222] ATP-dependent 26S proteasome regulatory subunit 
TIGRFAM ID[TIGR01242] 26S proteasome subunit P45 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000427133 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GATTACACTG TTGTTTCATT TCATTTACGT GTTGATATTC TTGATTTTGT TAACATAGTC 
GGAATCAATA GTGTTGTCTT TATAAAGTAC ACAAAAGGTT GTAAGTATTA CTGACATTAC
TGTGGTGATT ACTATTAGAA TACAATAATA TCTATTCGTT TCTGTTGCTG ATTTTTCATT
CATATTTCTC AATAATATCT TCATATTTCA TACATTTTTC CAAATAATCA GTTTCTATCA
TAGTCAATTG CCGTAATGGA AGAACCCGTC ATTTTCGAAT CCGCTAATTT GACTGCTCCC
TTCAGCAAAC ACAAGTCACA AATAGAAGAC AGCTCTGACT CCTACTTGAA GTTAAAGAAG
TTAGAAAAGG AGTTGGACCT CTTGCTCTTG CAGGAAGATT ACATCAAAGA TGAACAGCGC
CACTTGAGAA GAGAGTTGGT GAGAGCTCAA GAGGAAGTCA AGAGAATCAA GTCTGTTCCT
TTAGTGATTG GTCAGTTCTT GGAACCTATT GATGAGAACA CAGGCATTGT TTCTTCGACT
ACTGGCTCCA ACTATGTAGT GAGAATCTTG TCGACATTGG ACAGAGAATT GTTGAAGCCA
TCGTCTTCTG TAGCTTTGCA TCGTCACTCC AACGCGTTAG TAGATATCTT GCCTCCTGAA
GCTGACTCAT CAATTTCCAT AGTTGGTGAC GACCAGAAGC CAGATGTCAC CTACGCCGAC
GTTGGTGGTT TGGATATGCA GAAGCAGGAA ATCAGAGAAG CTGTAGAGTT GCCCTTGACC
CAGGGTGACT TGTATTCGCA AATTGGTATC GATCCACCAA GAGGTGTCTT GTTATACGGT
CCCCCAGGAA CAGGGAAGAC CATGTTAGTC AAAGCTGTGG CCAACTCGAC CACAGCATCG
TTTATCCGTA TCAACGGTTC AGAGTTCGTC CAGAAATACT TAGGTGAGGG GCCTAGAATG
GTCAGAGATG TGTTCCGATT GGCCAGAGAA AACTCGCCCG CCATTATTTT CATAGATGAA
ATAGATGCCA TTGCGACAAA GAGATTCGAC GCTCAGACGG GGGCCGACAG AGAAGTTCAG
AGAATCTTGT TGGAGTTATT GAACCAGATG GATGGCTTTG ATCAGACGTC TACAGTAAAG
GTCATCATGG CCACTAATAG AGCAGACACA TTGGATCCAG CCTTGTTGAG ACCTGGAAGA
TTGGACAGAA AAATCGAATT CCCTTCGTTG AAAGACAGAA GAGAAAGAAG ACTCATCTTT
TCCACCATTG CCTCCAAGAT GTCGTTGGCT CCGGAAGTCG ACTTGGACTC GTTGATCATC
AGAAATGATC CCTTGTCCGG TGCCGTCATC GCTGCCATCA TGCAAGAAGC TGGCTTGAGA
GCCGTAAGAA AGAACAGATA CATGATCTTG CAAAGTGACT TGGAAGAAGC TTACACTTCT
CAAGTTAAAA CTGGTAGTGA ACACGATAAG TTCGACTTCT ACAAGTAGAC TTGGTCTTTG
TATATTATCA TTAATGCAAA AAATATCAAA CGT
 
Protein sequence
MEEPVIFESA NLTAPFSKHK SQIEDSSDSY LKLKKLEKEL DLLLLQEDYI KDEQRHLRRE 
LVRAQEEVKR IKSVPLVIGQ FLEPIDENTG IVSSTTGSNY VVRILSTLDR ELLKPSSSVA
LHRHSNALVD ILPPEADSSI SIVGDDQKPD VTYADVGGLD MQKQEIREAV ELPLTQGDLY
SQIGIDPPRG VLLYGPPGTG KTMLVKAVAN STTASFIRIN GSEFVQKYLG EGPRMVRDVF
RLARENSPAI IFIDEIDAIA TKRFDAQTGA DREVQRILLE LLNQMDGFDQ TSTVKVIMAT
NRADTLDPAL LRPGRLDRKI EFPSLKDRRE RRLIFSTIAS KMSLAPEVDL DSLIIRNDPL
SGAVIAAIMQ EAGLRAVRKN RYMILQSDLE EAYTSQVKTG SEHDKFDFYK