| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_42612 |
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| Symbol | ROM2 |
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| ID | 4837339 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | + |
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| Start bp | 456561 |
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| End bp | 459458 |
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| Gene Length | 2898 bp |
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| Protein Length | 896 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640388654 |
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| Product | Gdp-GTP Exchange Protein (GEP) for the Rho1p Small GTP-binding Protein |
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| Protein accession | XP_001382323 |
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| Protein GI | 126131596 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5422] RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.019797 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00259781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCAACCTT TGCCATACAA TTCTTCGGTA TATCCTGCTC TTTTGTCAGA AGTAGCTAAG
GTCTTTAAGG AAGTCATTAT CTTGACCATA AACACCAAAG ATGGTTTGGA GTACCACGAC
ACTTTTACTG GTAAAATGTC GGTGGATATC ATCTGTAGAA TTATCCGTAC CAGTGACAGA
AACTTGGCTT TGTTATTGGG AAGATCGTTG GATGCACAAA AGTTCTTTCA TGATGTTACT
TATAATCACA GATTGAGAGA CTCTGTCCAC GAAGTATATG CTTTCAGTCA CATTTATAGT
GACGTAGAAT TCTACCATGA TGAGGGAAAT AGCAACAGCG CAAACAATTC GAAACATGGC
TCGTTTGTAG TGGACAACAA CCATCAGTTG CAACATGGTT TGCTGGACCA GGCTTTCCAC
CTACAGCAGC CATCAATTTC TCCCCTAATG CCCAGCTCCG ATGTTCTTAA AGAAAGTACT
TCTCTTGTCA AATCTAATAG CATCGCCAAG GAGGCTTCTG CTTCACAACA AACTGGCGTC
AACGGTGTTT TCACCATTTT GACCGACTGT TACTCGCCTA CTTGTACGAG AAACAGGTTG
TGTTACAGTA TTGCTTGTCC ACGTAGATTG GAGCAACAAG CACGTCTCAA TATGAAGCCA
CAGGGCGGAT TGAAGAGGGC TGTTTCTAGA TTGTCTTTGC ATGAAAAGGA AGAAACCAAG
ACATTATGGC ACGAAACAGT TCCACAATCG ATCTTGGATA AATTGGACAA GCAAGAAAAG
ATGAGACAAG AGTTAATCTA CGAATTCATC TACACCGAAA GAGACTATGT CAAGGATCTT
GAATTCATGA CCGATTTCTA TATCATGCCA TTGCGAAACC CTGCCAACAA TATCATTCCT
GAAAACCAGC GTGAAACGTT TATCCACACT GTTTTTGGAG GAGTTGGCGA CCTCTTAAGA
TTGGCTAAGA ATATGAGTGA AGCTTTAACC AGACGTCAAC AACAGCAGAA GCCTGTTGTC
GAAACGTTGG GTGATGTGTT CTTAGACTAT GTTGGCAACT TTGAGCCGTT TATTAGGTAT
TCTGGTAACA AGGTATTTGC CAGTTTCGAG CATGAGAGAC AACAACAGGT CAACATGAGA
TACGCCCGCT TTTTGGATGC AATCGAAAAG AAACCCGAGT CCAGAAAACA GGACTTATCT
TCTTTCTTGA TCAAGGGAGT CCAGAGACCT GCCAGATATC AGTTGTTGTT GGGCGGTATC
TTGAAGAATA CAAAACCAGA GTCGCCTGAC TATAAGAATC TCGTCAAGGC CAAAGAAGAG
ATCGAGAGGG TTTTAGGCAA GATCAACATC CAGACGGGTG AAAGCACTGA CAGACACAAG
ATCATGGTGT TGCATAGATT GTTAGGAAAA CAAACGTTAG AAACGAAGTA CAACTTCAAG
TTATCCTACA ATCACCGGAT TATCTATCAG GTTACGTTAA GCAGAAAGAG AGATAACGAA
AAAATTGACT TGTATCTTTT CGAGCATGCT CTTTTATTGG TGAAACACAA GATACAGAAC
AAGAGAGAAC AGCATAAGGT GTTTGAAAAG CCTCTTTATC TCCCCTTATT ATATGCCAAT
AGTGGCTATG ATGTTCCTAC CATCAGATCG GTGATAAGCC ATAGATACAG AGGGTCTGTT
ATATCTGATA CTGGCTTGAA AAACAGAGCA GAAAGCACCA CGTACATTGG TACTACGTTG
AACTCCAATT CTACCAACAA GTTCCAGTTG AACATCTTGG GATTGGGAAG TAACCAGGTC
CACGCTACGT TGTTTGCAGA TGAGTTATCA GTGCAGAATC AAGTCTTGCA GCAAATCTAC
AACCAACAGA AGAAGCTCAT TGAAGAAAAT GATTTGTTCT CGTTGTCCAA ATATGAAACA
AGAAGGTTCC ATGGCAACAA TAAGATCAAC TGTGCTGTTC CCTGTTACGG AGGGAAAAAG
TTGTTGTATG GTACAGATTC TGGAGTGTGG GTATCTACTG TTCGTTCCAT CAGCGCTACT
TCTAACGAAA AGATCTGTTC AGATCCAACG TTAGTTATCA GCAAGATGTA CGTAACTCAG
ATTGAGGTTG TGGTGGAGTA CTCCAAGATC TTGATCTTAA GCGACAAGAC TTTATACGAG
TTTGATTTGT CGTGTACAGA TTCTTTGGAC CACCAAAAGA ACACCAAGTC TGGCAAAATG
ATCTTGAACC ACGTCTCGTT CTTCAAGATT GGTATATGTG ACGGAAGATT GTTGGTATGT
GCCGCAAAGA CTGGAAGCAC CCACTCCATC AGTATCTTTG AGCCTGCCAA TCCGTTTGAC
AAGAATAACC AGAGAAATAA GAACAAGAAG TACGATATTC AGGAAGTGAC TTTTTCGTCT
GATCCTATAT CGATTTCGTT CTTGAAGACA ATGCTCTGTG TTGGTTGTAC CAAGGGCTTT
GAGAGTTTGT CATTGGAGAA GGGAATGAAG GAATCGATTC TTGACGAAGC TGATCCTTCA
TTGGATTTCG CTATACAAAG AGAAACAGTA ACTCCGTTGG CTATCCACAG ATTGGGCAGA
AGCGACTTCT TGTTGTGTTA TGCTGAATTC GTATTCTTGA TCAACAAGAA TGGGTGGAGA
ACGAACCACT ATTGGGATAT CTACTGGGAA GGTAATCCAC AGAATGTAGC GTTGTTCTTT
CCCTACTTGT TGTCGTTTGA GCCTGGCTTC ATAGAAATCA GAGACTTAAA CTCCACCAAA
TTGTTGAGAG CGTTGGTTGG CGACAACATC CGGTTCCTTC ATTCCAACGA GCATGAAGCG
TTGTATGCCT GCTCCGAGAA TGGCTACGAC ATCATTGTGT CTATTGACTT CTTGAACTTG
AAGCCACGGA CCGCATAA
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| Protein sequence | MQPLPYNSSV YPALLSEVAK VFKEVIILTI NTKDGLEYHD TFTGKMSVDI ICRIIRTSDR
NLALLLGRSL DAQKFFHDVT YNHRLRDSVH EVYAFSHIYS DEASASQQTG VNGVFTILTD
CYSPTCTRNR LCYSIACPRR LEQQARLNMK PQGGLKRAVS RLSLHEKEET KTLWHETVPQ
SILDKLDKQE KMRQELIYEF IYTERDYVKD LEFMTDFYIM PLRNPANNII PENQRETFIH
TVFGGVGDLL RLAKNMSEAL TRRQQQQKPV VETLGDVFLD YVGNFEPFIR YSGNKVFASF
EHERQQQVNM RYARFLDAIE KKPESRKQDL SSFLIKGVQR PARYQLLLGG ILKNTKPESP
DYKNLVKAKE EIERVLGKIN IQTGESTDRH KIMVLHRLLG KQTLETKYNF KLSYNHRIIY
QVTLSRKRDN EKIDLYLFEH ALLLVKHKIQ NKREQHKVFE KPLYLPLLYA NSGYDVPTIR
SVISHRYRGS VISDTGLKNR AESTTYIGTT LNSNSTNKFQ LNILGLGSNQ VHATLFADEL
SVQNQVLQQI YNQQKKLIEE NDLFSLSKYE TRRFHGNNKI NCAVPCYGGK KLLYGTDSGV
WVSTVRSISA TSNEKICSDP TLVISKMYVT QIEVVVEYSK ILILSDKTLY EFDLSCTDSL
DHQKNTKSGK MILNHVSFFK IGICDGRLLV CAAKTGSTHS ISIFEPANPF DKNNQRNKNK
KYDIQEVTFS SDPISISFLK TMLCVGCTKG FESLSLEKGM KESILDEADP SLDFAIQRET
VTPLAIHRLG RSDFLLCYAE FVFLINKNGW RTNHYWDIYW EGNPQNVALF FPYLLSFEPG
FIEIRDLNST KLLRALVGDN IRFLHSNEHE ALYACSENGY DIIVSIDFLN LKPRTA
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