| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_34770 |
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| Symbol | RCA1 |
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| ID | 4837507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 75458 |
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| End bp | 78061 |
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| Gene Length | 2604 bp |
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| Protein Length | 867 aa |
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| Translation table | 12 |
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| GC content | 43% |
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| IMG OID | 640388822 |
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| Product | Mitochondrial respiratory chain complexes assembly protein RCA1 (TAT-binding homolog 12) |
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| Protein accession | XP_001382776 |
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| Protein GI | 150864081 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0465] ATP-dependent Zn proteases |
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| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00577984 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0143281 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGAATG CGTTTTTGGA TCAATGCCAT ATCTACAACT CCAACAATAG ATCCCGTTTA
ACTCCTGATC AGATCATTGA CGAAATTGAC ACTATGTTCA AGAACCTTCA TCCCGACTTG
ACTCCTTTAA CAAAAAAGGA AGTATTGTTC TATTTCCATA TCTACTATTC GTTGCTGAAC
AATGTTGTAT TTTTGGACGA GTTGGACTTT CAGAATGTCC AAGTAACTAA GTACTTGAAG
GGATATGTTT CGATGTCTCC CACTACAAAC AAGGAAGAGT TGATTGAAGA GCTTGCTAAA
TCAAGCGAGA CTGCACCTGA AGTCGTTTCG TCGTGGTTCA ACATCTTTGA CACGTTATCT
TCGACTCCGT TTGCTGATTC CAACACCAGA TACACGAACC CATTATGCCC TTACGAATAC
GCTCGTTACC AAAGCTTCAC TAACGAGTTG AGGACGATGC AAGAGAAACT CAAGCAAGTC
TACGGAGGTT CTACTACTAA GGACTCGAAG AATGAGTCTG TCTTCGGCAA CTTTTCCTTT
CAAACGAACT CCGACAATAA TAAGGGCAAA GACTCTAAGA CAAACAGCTC AAAGGATAAT
AAGGATGGTA AGGACAATAA GAATAACAAG AAGAACATCG ACATTGAGAT TAATTTTAAT
AGCTCGCCTA TGAGATTCTT CCAGGTAGGT GTCTTGATTG GTTTATTATC ATACATCGTA
TACAACTTGA CACAGTCTTC CAATAACGAG ATCAGCTTTC AGCAGTTCAC CACTGACTTC
TTGAGCAAGA ACTTGGTAGA TAAGGTCGTT GTTGTCAACA ACAGAATTGC AGTTGTAGAA
TTGAATGAAA ACGGAAGAGC TCAGTATCCT CATCATGAAG GAAACTTCTA CTTCAACATC
GGTGCTATTG AGTCGTTTGA AAAGAATTTA CGTAGTGTGC AAGAAGACTA TAACGTAGCC
GATCTGATGA GAGTTCCAGT CATCTACACA AACGAAGGAA GTACCACCAA GATGCTTGTC
AACTTCTTAC CTACAGTGTT ATTCTTGGGT GCGATCTACT ACATGACCAA GAAAGCTACT
GGTATGGGTG GAATGGGAGG ACCATTGGGG TTCGGTAAGT CTACTGCTAA GAAATTCAAC
CAGGACACCG ATATCAAAAT CAGATTTAGA GATGTAGCTG GCATGGCTGA AGCCAAAGAA
GAGGTCATGG AGTTCGTCAA GTTCTTGCAG AACCCAGAAA AGTATGAGAG ATTAGGAGCA
AAGATCCCCA GAGGTGCCAT TCTTTCGGGT CCTCCAGGAA CTGGTAAAAC CTTGCTTGCT
CGTGCTACTG CTGGAGAAGC AGGTGTCCCA TTCTATTCAG TTTCTGGTTC TGAATTCGTA
GAGATGTTTG TCGGTGTAGG TGCTTCCAGA GTTCGTGACT TGTTCAAGAC TGCTCGTGAA
AACGCCCCCT CCATTGTCTT TGTAGATGAG ATCGATGCTA TTGGTAAACA GCGTTCTAAG
GGTAATGCCA GCGGTGCCAA CGATGAACGT GAGACAACTT TGAACCAGTT ATTGGTTGAA
ATGGATGGCT TTGATACCTC CGATCATGTT GTCGTCTTGG CTGGTACAAA CAGAGCTGAT
ATTTTGGATA GGGCCTTGTT GAGACCAGGG AGATTCGATA GACACATTTC AATTGACAAT
CCTGAGTTGC AGGGTCGTAA GGAGATTTTT CAAGTTCACT TGAGGAAGAT CAAATTGAAG
AAGGATATTG ACGACGATTT GCCAGGTAGA TTAGCTGCGT TGACTCCTGG TTTTTCTGGT
GCTGATATCG CCAATGTCTG CAACGAAGCC GCATTGATCG GTGCCAGGTA CAATGCCGAC
TCGGTGACGT TGAGACACTT TGAATTGGCC ATTGAGAGAG TTATTGGTGG TATCGAGAAG
AAGTCAAAGC TTTTGAACGC TGAAGAGCAG AGAATCGTAG CTTACCATGA AGCTGGCCAT
GCTGTCTGTG GTTGGTATTT GAAGTACGCC CATCCTTTGT TGAAAGTGTC TATTATTCCT
AGAGGTCAAG GCGCTTTGGG ATATGCGCAG TATTTGCCTC CTGATCAGTT CTTGTTGTCT
ACATTGCAAT TGTACGACAG AATGATCATG ACATTGGGTG GCCGTGTATC CGAAGAATTG
CATTTCTCTT CTGTTACCAG TGGTGCCCAC GATGACTTCA AGAAAGTTAC CAATATTGCC
CAATCCATGG TTTTGCGTTT TGGGATGTCA AAGAAAGTTG GTATGGTAAA CTACGCTGAT
ACTCAGTCAC AGGACAATTT GACGAAGCCA TTCAGTGACG AGACCAGCAA GACCATTGAC
GAAGAAGTAC AGAGAATAGT GGGCGAGTGT CACAAGAGAT GTAAGGAATT GTTGATTGAG
AAATCTAAGG AAGTCGAGTT GGTTGCGGAA GAGTTGTTGA AAAAGGAGTT CATCACAAGA
GAAGATATGA TCAGATTGTT GGGTAAGAGA CCATTCCCTG AAACCAACGA TGCCTTTGAC
AAGTATCTTG AAAAGAAGCC AGCGTTCAAG AATGAGAAAC CGGCCGACGA AAAGAAGGAC
GACGAGAAGG AAGAAGAAAA GTAA
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| Protein sequence | MLNAFLDQCH IYNSNNRSRL TPDQIIDEID TMFKNLHPDL TPLTKKEVLF YFHIYYSLSN
NVVFLDELDF QNVQVTKYLK GYVSMSPTTN KEELIEELAK SSETAPEVVS SWFNIFDTLS
STPFADSNTR YTNPLCPYEY ARYQSFTNEL RTMQEKLKQV YGGSTTKDSK NESVFGNFSF
QTNSDNNKGK DSKTNSSKDN KDGKDNKNNK KNIDIEINFN SSPMRFFQVG VLIGLLSYIV
YNLTQSSNNE ISFQQFTTDF LSKNLVDKVV VVNNRIAVVE LNENGRAQYP HHEGNFYFNI
GAIESFEKNL RSVQEDYNVA DSMRVPVIYT NEGSTTKMLV NFLPTVLFLG AIYYMTKKAT
GMGGMGGPLG FGKSTAKKFN QDTDIKIRFR DVAGMAEAKE EVMEFVKFLQ NPEKYERLGA
KIPRGAILSG PPGTGKTLLA RATAGEAGVP FYSVSGSEFV EMFVGVGASR VRDLFKTARE
NAPSIVFVDE IDAIGKQRSK GNASGANDER ETTLNQLLVE MDGFDTSDHV VVLAGTNRAD
ILDRALLRPG RFDRHISIDN PELQGRKEIF QVHLRKIKLK KDIDDDLPGR LAALTPGFSG
ADIANVCNEA ALIGARYNAD SVTLRHFELA IERVIGGIEK KSKLLNAEEQ RIVAYHEAGH
AVCGWYLKYA HPLLKVSIIP RGQGALGYAQ YLPPDQFLLS TLQLYDRMIM TLGGRVSEEL
HFSSVTSGAH DDFKKVTNIA QSMVLRFGMS KKVGMVNYAD TQSQDNLTKP FSDETSKTID
EEVQRIVGEC HKRCKELLIE KSKEVELVAE ELLKKEFITR EDMIRLLGKR PFPETNDAFD
KYLEKKPAFK NEKPADEKKD DEKEEEK
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