Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_41967 |
Symbol | |
ID | 4837468 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009042 |
Strand | + |
Start bp | 2146974 |
End bp | 2147708 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 12 |
GC content | 44% |
IMG OID | 640388783 |
Product | predicted protein |
Protein accession | XP_001382637 |
Protein GI | 150863976 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5073] Vacuolar import and degradation protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00407294 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0529872 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTCGATGCAT ACAACTACCA GGTAAGAAAC CACAATAAGG TACCTCGGTT CATGAACTCT TACCTTCGAT CCAACGCGGT CTATGTAGGC GAACAACAGT CGGGAAAGTC ACGTTTCCAC ATCAAGGTAG AGTTGAAAAG CATCGATCTC ATGAACCTGG TAGTCACGGG ATTTCTCCAG ATTTCGGGAC TCACTGAAGA CCATTCTGAA ATCATTACGT GTTTCAAAGG TGAAATCATC AATAACCCCA TGAATACGTA TTTGTGGCAG GATCGAGAGA AGAAGTCTCC CAACGACTAC AAGGTGAGAA ATTTTTCGTT CATCACAGAG AACAAGCAGT GGGGCTCTTT TATCAAGAAC GACTTCGAAC ACTGGAAAAA ACTCACAGGA TCATCTACTC TAAGTGACGA ACAGTTCCAG CAGCGCTTGG AACGTATTCT GCGGGGCGAA GAAGACCAAC AGTACTTGTA TATGCGGTGG AAGGAAGAGT TCTTGTTGCC AGATTCTCGA ATCAAGCAGA TACTGGGAGC TTCCTTCGAA GGTTTCTATT ACATTGTCAT GAATATCGGC TCGGAAGACC ATGTCAACTA CTCGGCTCCA TATGTGCATT CCACCACTAT AAGTCCCGGC TCTATCAGTG GCTTGTACTA CCACAAATCG TCAGAAAAGT TTCAGTCGTT GAGTCTTCGG TATGTTGAGG ATCGGGGTGT ATCCAATACT TTTCAGTTCT ACTAA
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Protein sequence | FDAYNYQVRN HNKVPRFMNS YLRSNAVYVG EQQSGKSRFH IKVELKSIDL MNSVVTGFLQ ISGLTEDHSE IITCFKGEII NNPMNTYLWQ DREKKSPNDY KVRNFSFITE NKQWGSFIKN DFEHWKKLTG SSTLSDEQFQ QRLERISRGE EDQQYLYMRW KEEFLLPDSR IKQISGASFE GFYYIVMNIG SEDHVNYSAP YVHSTTISPG SISGLYYHKS SEKFQSLSLR YVEDRGVSNT FQFY
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