10 homologs were found in PanDaTox collection
for query gene Sfri_1224 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008345  Sfri_1224  sigma-70 factor  100 
 
 		 177 aa  362  2e-99  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_3561  sigma-70 factor  46.71 
 
 		 178 aa  142  2e-33  Saccharophagus degradans 2-40  Bacteria  normal  0.373178  normal  0.402899 
 
 
-
 
NC_008740  Maqu_1808  biopolymer transport protein ExbD/TolR  43.18 
 
 		 166 aa  125  3e-28  Marinobacter aquaeolei VT8  Bacteria  normal  0.712122  n/a   
 
 
-
 
NC_011901  Tgr7_0537  sigma-70 factor  42.05 
 
 		 170 aa  122  3e-27  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.513194  n/a   
 
 
-
 
NC_008740  Maqu_1596  biopolymer transport protein  40.8 
 
 		 162 aa  119  1.9999999999999998e-26  Marinobacter aquaeolei VT8  Bacteria  normal  0.756839  n/a   
 
 
-
 
NC_008825  Mpe_A1230  adventurous gliding motility protein S  38.36 
 
 		 163 aa  98.6  4e-20  Methylibium petroleiphilum PM1  Bacteria  normal  0.096115  normal  1 
 
 
-
 
NC_007912  Sde_2955  hypothetical protein  36.42 
 
 		 185 aa  92.4  3e-18  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009483  Gura_3071  hypothetical protein  33.72 
 
 		 166 aa  86.3  2e-16  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_0444  Biopolymer transport protein ExbD/TolR  32.95 
 
 		 165 aa  71.2  0.000000000008  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_009675  Anae109_4453  adventurous gliding motility protein S  23.98 
 
 		 194 aa  42  0.005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.106423  normal  1 
 
 
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