| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3561 |
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| Symbol | |
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| ID | 3966423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4521203 |
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| End bp | 4521739 |
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| Gene Length | 537 bp |
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| Protein Length | 178 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637922658 |
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| Product | sigma-70 factor |
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| Protein accession | YP_529028 |
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| Protein GI | 90023201 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0848] Biopolymer transport protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.373178 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.402899 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAGT CTATACATGC TAAACGTATG GCGCGTCACC ACAAGCGCAA CAGTGTGCCT
AAGCTTAACC TCGTTTCACT AATGGATATT TTTACCATTC TGGTTTTCTT CCTGTTGGTT
AACTCATCGG AAGTGGAGGT GCTGCAAAGC AATAAAGATA TCGACTTACC TCAGTCTATC
GCTGAGAAAA AGCCAGATAA CAACCTGATA ATTATGATTA GCCAAGACAA TATAATTGTT
GGCGGGCGCA GCATAGTAAC GGTAGAAAAC GCAGTCGCGG AAGAAGGGTT GAATATTACG
GCGCTGGCGG ATGAGTTAGC TCGCCGCGCT AAAAATAAGC CCTATAAAAA TGAAGAAGAG
GCAACAAAAG GCAGAAGCGT AACAATCATG GGGGATAAAA GTATTCCTTA CACCATGATT
AAAAAAGTGA TGTCCACCTG TGCCAACTCC GATTTCCGCA ATATATCGCT CGCGGTAAAT
CAGGTGCCAG ACGCATCGGC TGAAGGCTTG TTGGAAAGCG CTGGCGGGGA GGGGTAG
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| Protein sequence | MKQSIHAKRM ARHHKRNSVP KLNLVSLMDI FTILVFFLLV NSSEVEVLQS NKDIDLPQSI
AEKKPDNNLI IMISQDNIIV GGRSIVTVEN AVAEEGLNIT ALADELARRA KNKPYKNEEE
ATKGRSVTIM GDKSIPYTMI KKVMSTCANS DFRNISLAVN QVPDASAEGL LESAGGEG
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