More than 300 homologs were found in PanDaTox collection
for query gene Vapar_3873 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_3873  Acyl-CoA dehydrogenase type 2 domain protein  100 
 
 
411 aa  806    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2217  Acyl-CoA dehydrogenase  65.6 
 
 
402 aa  495  1e-139  Cupriavidus metallidurans CH34  Bacteria  normal  0.0777616  normal  0.101595 
 
 
-
 
NC_010678  Rpic_4462  Acyl-CoA dehydrogenase type 2 domain  63.39 
 
 
402 aa  493  9.999999999999999e-139  Ralstonia pickettii 12J  Bacteria  normal  normal  0.542965 
 
 
-
 
NC_012857  Rpic12D_4596  Acyl-CoA dehydrogenase type 2 domain protein  63.39 
 
 
402 aa  493  9.999999999999999e-139  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4154  acyl-CoA dehydrogenase domain-containing protein  66.84 
 
 
440 aa  489  1e-137  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.233252 
 
 
-
 
NC_008391  Bamb_3681  acyl-CoA dehydrogenase domain-containing protein  66.32 
 
 
442 aa  483  1e-135  Burkholderia ambifaria AMMD  Bacteria  normal  0.902105  normal 
 
 
-
 
NC_010515  Bcenmc03_3260  acyl-CoA dehydrogenase domain-containing protein  65.71 
 
 
459 aa  463  1e-129  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4333  acyl-CoA dehydrogenase type 2  64.71 
 
 
440 aa  463  1e-129  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.619225  normal  0.220534 
 
 
-
 
NC_007348  Reut_B5046  Acyl-CoA dehydrogenase, C-terminal  61.67 
 
 
402 aa  457  1e-127  Ralstonia eutropha JMP134  Bacteria  normal  0.721222  n/a   
 
 
-
 
NC_007511  Bcep18194_B1754  Acyl-CoA dehydrogenase  66.31 
 
 
454 aa  457  1e-127  Burkholderia sp. 383  Bacteria  normal  normal  0.0688656 
 
 
-
 
NC_008061  Bcen_4109  Acyl-CoA dehydrogenase, type 2-like  65.51 
 
 
452 aa  452  1.0000000000000001e-126  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.381793  n/a   
 
 
-
 
NC_008543  Bcen2424_4257  acyl-CoA dehydrogenase type 2  65.51 
 
 
452 aa  452  1.0000000000000001e-126  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00125865  normal  0.295507 
 
 
-
 
NC_010581  Bind_0523  acyl-CoA dehydrogenase type 2  57.33 
 
 
407 aa  424  1e-117  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3604  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  54.21 
 
 
393 aa  405  1.0000000000000001e-112  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.339437 
 
 
-
 
NC_012560  Avin_31100  Acyl-CoA dehydrogenase family protein  54.66 
 
 
396 aa  394  1e-108  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2538  acyl-CoA dehydrogenase type 2  55.91 
 
 
378 aa  394  1e-108  Pseudomonas putida GB-1  Bacteria  normal  0.844573  decreased coverage  0.00557828 
 
 
-
 
NC_004578  PSPTO_1790  acyl-CoA dehydrogenase family protein  53.12 
 
 
397 aa  391  1e-107  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1981  putative acyl-CoA dehydrogenase  53.59 
 
 
388 aa  389  1e-107  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3226  acyl-CoA dehydrogenase-related protein  55.49 
 
 
380 aa  376  1e-103  Pseudomonas putida KT2440  Bacteria  normal  0.690171  normal 
 
 
-
 
NC_010338  Caul_2659  acyl-CoA dehydrogenase type 2  54.05 
 
 
390 aa  376  1e-103  Caulobacter sp. K31  Bacteria  normal  normal  0.387509 
 
 
-
 
NC_008463  PA14_30500  putative acyl-CoA dehydrogenase  57.88 
 
 
383 aa  376  1e-103  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_21570  Acyl-CoA dehydrogenase family protein  52.85 
 
 
400 aa  372  1e-102  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_5014  acyl-CoA dehydrogenase type 2  53.19 
 
 
384 aa  372  1e-102  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3307  putative acyl-CoA dehydrogenase  53.64 
 
 
394 aa  366  1e-100  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4897  acyl-CoA dehydrogenase domain protein  55.27 
 
 
381 aa  365  1e-100  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1390  Acyl-CoA dehydrogenase type 2 domain protein  53.15 
 
 
384 aa  363  3e-99  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00428618  n/a   
 
 
-
 
NC_011666  Msil_2670  Acyl-CoA dehydrogenase type 2 domain protein  51.67 
 
 
389 aa  359  6e-98  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010172  Mext_1170  acyl-CoA dehydrogenase domain-containing protein  52.66 
 
 
381 aa  353  2e-96  Methylobacterium extorquens PA1  Bacteria  normal  0.665446  normal  0.0188326 
 
 
-
 
NC_011757  Mchl_1330  acyl-CoA dehydrogenase domain protein  53.19 
 
 
381 aa  353  2.9999999999999997e-96  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.135454  normal  0.523473 
 
 
-
 
NC_009621  Smed_5653  acyl-CoA dehydrogenase type 2  47.52 
 
 
410 aa  324  1e-87  Sinorhizobium medicae WSM419  Bacteria  normal  0.329683  normal  0.865966 
 
 
-
 
NC_010505  Mrad2831_4840  acyl-CoA dehydrogenase type 2  55.71 
 
 
381 aa  319  6e-86  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.910203 
 
 
-
 
NC_009485  BBta_5139  putative acyl-CoA dehydrogenase  47.26 
 
 
399 aa  313  1.9999999999999998e-84  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0630041 
 
 
-
 
NC_010581  Bind_1847  acyl-CoA dehydrogenase type 2  44.96 
 
 
382 aa  305  1.0000000000000001e-81  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.25699  normal 
 
 
-
 
NC_013131  Caci_2770  ccyl-CoA dehydrogenase type 2 domain protein  46.3 
 
 
406 aa  300  4e-80  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.271017  normal 
 
 
-
 
NC_009485  BBta_2584  putative acyl-CoA dehydrogenase  44.99 
 
 
398 aa  299  5e-80  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0375347 
 
 
-
 
NC_011981  Avi_7179  acyl-CoA dehydrogenase  42.09 
 
 
394 aa  274  2.0000000000000002e-72  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2020  acyl-CoA dehydrogenase type 2  42.31 
 
 
394 aa  268  1e-70  Frankia sp. EAN1pec  Bacteria  normal  0.692035  normal  0.294025 
 
 
-
 
NC_011988  Avi_5178  acyl-CoA dehydrogenase-related protein  39.95 
 
 
393 aa  236  7e-61  Agrobacterium vitis S4  Bacteria  normal  0.897204  n/a   
 
 
-
 
NC_009921  Franean1_3756  acyl-CoA dehydrogenase type 2  37.28 
 
 
418 aa  220  3.9999999999999997e-56  Frankia sp. EAN1pec  Bacteria  normal  0.326681  normal 
 
 
-
 
NC_007777  Francci3_2419  Acyl-CoA dehydrogenase  42.16 
 
 
332 aa  217  2.9999999999999998e-55  Frankia sp. CcI3  Bacteria  normal  0.238624  normal  0.291589 
 
 
-
 
NC_013093  Amir_4313  acyl-CoA dehydrogenase type 2 domain protein  39.34 
 
 
397 aa  216  7e-55  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1183  Acyl-CoA dehydrogenase type 2 domain protein  31.76 
 
 
390 aa  215  9.999999999999999e-55  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009523  RoseRS_0478  acyl-CoA dehydrogenase domain-containing protein  37.63 
 
 
396 aa  214  1.9999999999999998e-54  Roseiflexus sp. RS-1  Bacteria  normal  0.859047  normal 
 
 
-
 
NC_009767  Rcas_0150  acyl-CoA dehydrogenase domain-containing protein  36.34 
 
 
394 aa  202  6e-51  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0955  Acyl-CoA dehydrogenase type 2 domain protein  33.51 
 
 
398 aa  177  2e-43  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1626  Acyl-CoA dehydrogenase type 2 domain protein  32.45 
 
 
387 aa  163  5.0000000000000005e-39  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2547  Acyl-CoA dehydrogenase type 2 domain protein  32.37 
 
 
392 aa  162  8.000000000000001e-39  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B2142  putative acyl-CoA dehydrogenase, short-chain specific  30.9 
 
 
382 aa  155  2e-36  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_2857  acyl-CoA dehydrogenase, short-chain specific  30.51 
 
 
382 aa  154  2e-36  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.25076  n/a   
 
 
-
 
NC_006274  BCZK2818  acyl-CoA dehydrogenase, short-chain specific  30.9 
 
 
382 aa  154  2e-36  Bacillus cereus E33L  Bacteria  normal  0.149479  n/a   
 
 
-
 
NC_011658  BCAH187_A3128  putative acyl-CoA dehydrogenase, short-chain specific  30.9 
 
 
382 aa  154  2e-36  Bacillus cereus AH187  Bacteria  hitchhiker  0.000407188  n/a   
 
 
-
 
NC_011773  BCAH820_3109  putative acyl-CoA dehydrogenase, short-chain specific  30.51 
 
 
382 aa  154  2.9999999999999998e-36  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011725  BCB4264_A3094  putative acyl-CoA dehydrogenase, short-chain specific  31.18 
 
 
382 aa  154  2.9999999999999998e-36  Bacillus cereus B4264  Bacteria  normal  0.952201  n/a   
 
 
-
 
NC_005945  BAS2889  acyl-CoA dehydrogenase, short-chain specific  30.9 
 
 
382 aa  154  4e-36  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00742766  n/a   
 
 
-
 
NC_009632  SaurJH1_2352  acyl-CoA dehydrogenase type 2  28.68 
 
 
384 aa  154  4e-36  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.657423  n/a   
 
 
-
 
NC_007530  GBAA_3105  acyl-CoA dehydrogenase, short-chain specific  30.9 
 
 
382 aa  154  4e-36  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.362062  n/a   
 
 
-
 
NC_009487  SaurJH9_2310  acyl-CoA dehydrogenase type 2  28.68 
 
 
384 aa  154  4e-36  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.154104  n/a   
 
 
-
 
NC_003909  BCE_3126  acyl-CoA dehydrogenase, short-chain specific, putative  29.57 
 
 
382 aa  152  1e-35  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00757934  n/a   
 
 
-
 
NC_009674  Bcer98_2066  acyl-CoA dehydrogenase type 2  29.89 
 
 
384 aa  152  1e-35  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.335702  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2881  acyl-CoA dehydrogenase type 2  30.51 
 
 
382 aa  150  4e-35  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.255861  n/a   
 
 
-
 
NC_002976  SERP1866  acyl-CoA dehydrogenase-related protein  28.12 
 
 
381 aa  147  3e-34  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1231  Acyl-CoA dehydrogenase, type 2-like protein  37.5 
 
 
384 aa  138  2e-31  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.279686  normal 
 
 
-
 
NC_009972  Haur_2304  acyl-CoA dehydrogenase type 2  30.77 
 
 
392 aa  134  1.9999999999999998e-30  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0799931  n/a   
 
 
-
 
NC_013202  Hmuk_2082  acyl-CoA dehydrogenase domain protein  30.1 
 
 
376 aa  104  2e-21  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_013204  Elen_1859  acyl-CoA dehydrogenase domain protein  26.34 
 
 
379 aa  102  9e-21  Eggerthella lenta DSM 2243  Bacteria  normal  0.61075  normal  0.652799 
 
 
-
 
NC_009380  Strop_4265  acyl-CoA dehydrogenase type 2  30.67 
 
 
387 aa  102  1e-20  Salinispora tropica CNB-440  Bacteria  normal  normal  0.184931 
 
 
-
 
NC_007517  Gmet_3306  Acyl-CoA dehydrogenase-like  26.44 
 
 
380 aa  102  1e-20  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2091  Acyl-CoA dehydrogenase, type 2-like  28.83 
 
 
389 aa  100  3e-20  Chelativorans sp. BNC1  Bacteria  normal  0.424709  n/a   
 
 
-
 
NC_012560  Avin_31490  Acyl-CoA dehydrogenase family protein  28.8 
 
 
402 aa  100  4e-20  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1399  acyl-CoA dehydrogenase domain-containing protein  26.08 
 
 
385 aa  99.8  8e-20  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3775  acyl-CoA dehydrogenase domain protein  27.25 
 
 
386 aa  99  1e-19  Haliangium ochraceum DSM 14365  Bacteria  normal  0.212433  normal  0.155443 
 
 
-
 
NC_010525  Tneu_0539  acyl-CoA dehydrogenase domain-containing protein  26.04 
 
 
405 aa  99  1e-19  Thermoproteus neutrophilus V24Sta  Archaea  normal  hitchhiker  0.00283131 
 
 
-
 
NC_009901  Spea_2781  acyl-CoA dehydrogenase domain-containing protein  26.77 
 
 
385 aa  98.6  2e-19  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1377  butyryl-CoA dehydrogenase  26.65 
 
 
385 aa  98.2  2e-19  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0267981 
 
 
-
 
NC_009953  Sare_4695  acyl-CoA dehydrogenase type 2  29.87 
 
 
387 aa  97.4  4e-19  Salinispora arenicola CNS-205  Bacteria  normal  0.46169  normal  0.258533 
 
 
-
 
NC_009997  Sbal195_1527  acyl-CoA dehydrogenase domain-containing protein  25.82 
 
 
385 aa  97.4  4e-19  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1491  acyl-CoA dehydrogenase domain-containing protein  25.82 
 
 
385 aa  97.4  4e-19  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7011  acyl-CoA dehydrogenase domain protein  29.48 
 
 
382 aa  97.1  5e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  hitchhiker  0.00655237 
 
 
-
 
NC_009052  Sbal_1497  acyl-CoA dehydrogenase domain-containing protein  25.82 
 
 
385 aa  96.7  7e-19  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2854  acyl-CoA dehydrogenase domain protein  25.82 
 
 
385 aa  96.7  7e-19  Shewanella baltica OS223  Bacteria  normal  0.715109  hitchhiker  0.0000000460252 
 
 
-
 
NC_013947  Snas_0146  Acyl-CoA dehydrogenase type 2 domain-containing protein  28.57 
 
 
382 aa  95.1  2e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.658373 
 
 
-
 
NC_008322  Shewmr7_2662  acyl-CoA dehydrogenase domain-containing protein  25.32 
 
 
385 aa  94.7  2e-18  Shewanella sp. MR-7  Bacteria  normal  0.553599  normal 
 
 
-
 
NC_008345  Sfri_1340  butyryl-CoA dehydrogenase  25.7 
 
 
385 aa  95.1  2e-18  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.92296  n/a   
 
 
-
 
NC_008577  Shewana3_2769  acyl-CoA dehydrogenase domain-containing protein  25.32 
 
 
385 aa  95.5  2e-18  Shewanella sp. ANA-3  Bacteria  normal  normal  0.329604 
 
 
-
 
NC_003910  CPS_2719  acyl-CoA dehydrogenase  26.87 
 
 
385 aa  94.4  3e-18  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1941  butyryl-CoA dehydrogenase  25.51 
 
 
385 aa  94  5e-18  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01905  Acyl-CoA dehydrogenase family protein  24.93 
 
 
397 aa  93.6  7e-18  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.271746  n/a   
 
 
-
 
NC_008321  Shewmr4_2595  acyl-CoA dehydrogenase domain-containing protein  25.06 
 
 
385 aa  93.2  8e-18  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.000133331 
 
 
-
 
NC_013205  Aaci_2056  acyl-CoA dehydrogenase domain protein  25.78 
 
 
377 aa  91.7  2e-17  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.232194  n/a   
 
 
-
 
NC_012560  Avin_31480  Acyl-CoA dehydrogenase family protein  27.8 
 
 
424 aa  91.3  3e-17  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_0732  acyl-CoA dehydrogenase domain protein  26.12 
 
 
379 aa  90.9  3e-17  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3919  acyl-CoA dehydrogenase domain-containing protein  27.54 
 
 
377 aa  90.9  4e-17  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0604342  normal 
 
 
-
 
NC_007494  RSP_3182  Acyl-CoA dehydrogenase  27.54 
 
 
377 aa  90.5  5e-17  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1669  butyryl-CoA dehydrogenase  25.38 
 
 
385 aa  90.5  6e-17  Shewanella loihica PV-4  Bacteria  normal  0.260436  hitchhiker  0.00156032 
 
 
-
 
NC_009077  Mjls_3501  acyl-CoA dehydrogenase type 2  26.62 
 
 
411 aa  89.4  9e-17  Mycobacterium sp. JLS  Bacteria  normal  0.102842  normal  0.83486 
 
 
-
 
NC_013440  Hoch_1175  acyl-CoA dehydrogenase domain protein  28.27 
 
 
411 aa  89.7  9e-17  Haliangium ochraceum DSM 14365  Bacteria  normal  0.14538  normal 
 
 
-
 
NC_008146  Mmcs_3488  Acyl-CoA dehydrogenase, type 2-like protein  26.62 
 
 
411 aa  89.4  9e-17  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3551  acyl-CoA dehydrogenase type 2  26.62 
 
 
411 aa  89.4  9e-17  Mycobacterium sp. KMS  Bacteria  normal  0.058709  normal 
 
 
-
 
NC_004347  SO_1679  acyl-CoA dehydrogenase family protein  24.56 
 
 
385 aa  88.6  2e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_1475  butyryl-CoA dehydrogenase  25.94 
 
 
385 aa  88.2  2e-16  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.00937307 
 
 
-
 
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