More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_2538 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010322  PputGB1_2538  acyl-CoA dehydrogenase type 2  100 
 
 
378 aa  761    Pseudomonas putida GB-1  Bacteria  normal  0.844573  decreased coverage  0.00557828 
 
 
-
 
NC_002947  PP_3226  acyl-CoA dehydrogenase-related protein  84.22 
 
 
380 aa  609  1e-173  Pseudomonas putida KT2440  Bacteria  normal  0.690171  normal 
 
 
-
 
NC_007005  Psyr_3604  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  70.65 
 
 
393 aa  537  1e-151  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.339437 
 
 
-
 
NC_004578  PSPTO_1790  acyl-CoA dehydrogenase family protein  71.78 
 
 
397 aa  525  1e-148  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_21570  Acyl-CoA dehydrogenase family protein  70.88 
 
 
400 aa  507  9.999999999999999e-143  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_31100  Acyl-CoA dehydrogenase family protein  65.05 
 
 
396 aa  466  9.999999999999999e-131  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2659  acyl-CoA dehydrogenase type 2  57.77 
 
 
390 aa  426  1e-118  Caulobacter sp. K31  Bacteria  normal  normal  0.387509 
 
 
-
 
NC_009485  BBta_1981  putative acyl-CoA dehydrogenase  56.45 
 
 
388 aa  419  1e-116  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0523  acyl-CoA dehydrogenase type 2  56.69 
 
 
407 aa  417  9.999999999999999e-116  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1390  Acyl-CoA dehydrogenase type 2 domain protein  59.15 
 
 
384 aa  388  1e-107  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00428618  n/a   
 
 
-
 
NC_010678  Rpic_4462  Acyl-CoA dehydrogenase type 2 domain  53.47 
 
 
402 aa  378  1e-104  Ralstonia pickettii 12J  Bacteria  normal  normal  0.542965 
 
 
-
 
NC_012857  Rpic12D_4596  Acyl-CoA dehydrogenase type 2 domain protein  53.47 
 
 
402 aa  378  1e-104  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3873  Acyl-CoA dehydrogenase type 2 domain protein  56.07 
 
 
411 aa  377  1e-103  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2217  Acyl-CoA dehydrogenase  54.78 
 
 
402 aa  370  1e-101  Cupriavidus metallidurans CH34  Bacteria  normal  0.0777616  normal  0.101595 
 
 
-
 
NC_010552  BamMC406_4154  acyl-CoA dehydrogenase domain-containing protein  50.51 
 
 
440 aa  357  1.9999999999999998e-97  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.233252 
 
 
-
 
NC_008463  PA14_30500  putative acyl-CoA dehydrogenase  56.64 
 
 
383 aa  355  7.999999999999999e-97  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_3260  acyl-CoA dehydrogenase domain-containing protein  50.78 
 
 
459 aa  352  4e-96  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3681  acyl-CoA dehydrogenase domain-containing protein  50.38 
 
 
442 aa  352  5.9999999999999994e-96  Burkholderia ambifaria AMMD  Bacteria  normal  0.902105  normal 
 
 
-
 
NC_008688  Pden_5014  acyl-CoA dehydrogenase type 2  51.37 
 
 
384 aa  352  7e-96  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5046  Acyl-CoA dehydrogenase, C-terminal  53.52 
 
 
402 aa  349  4e-95  Ralstonia eutropha JMP134  Bacteria  normal  0.721222  n/a   
 
 
-
 
NC_008061  Bcen_4109  Acyl-CoA dehydrogenase, type 2-like  51.47 
 
 
452 aa  345  8e-94  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.381793  n/a   
 
 
-
 
NC_008543  Bcen2424_4257  acyl-CoA dehydrogenase type 2  51.47 
 
 
452 aa  345  8e-94  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00125865  normal  0.295507 
 
 
-
 
NC_010086  Bmul_4333  acyl-CoA dehydrogenase type 2  51.2 
 
 
440 aa  343  2e-93  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.619225  normal  0.220534 
 
 
-
 
NC_007511  Bcep18194_B1754  Acyl-CoA dehydrogenase  50.93 
 
 
454 aa  341  1e-92  Burkholderia sp. 383  Bacteria  normal  normal  0.0688656 
 
 
-
 
NC_010725  Mpop_4897  acyl-CoA dehydrogenase domain protein  52.99 
 
 
381 aa  333  3e-90  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2670  Acyl-CoA dehydrogenase type 2 domain protein  48.41 
 
 
389 aa  330  3e-89  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009485  BBta_3307  putative acyl-CoA dehydrogenase  50.27 
 
 
394 aa  319  6e-86  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2770  ccyl-CoA dehydrogenase type 2 domain protein  46.95 
 
 
406 aa  316  4e-85  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.271017  normal 
 
 
-
 
NC_010172  Mext_1170  acyl-CoA dehydrogenase domain-containing protein  50.27 
 
 
381 aa  313  2.9999999999999996e-84  Methylobacterium extorquens PA1  Bacteria  normal  0.665446  normal  0.0188326 
 
 
-
 
NC_009485  BBta_5139  putative acyl-CoA dehydrogenase  45.58 
 
 
399 aa  312  6.999999999999999e-84  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0630041 
 
 
-
 
NC_011757  Mchl_1330  acyl-CoA dehydrogenase domain protein  50.95 
 
 
381 aa  309  5e-83  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.135454  normal  0.523473 
 
 
-
 
NC_010581  Bind_1847  acyl-CoA dehydrogenase type 2  41.37 
 
 
382 aa  301  1e-80  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.25699  normal 
 
 
-
 
NC_009621  Smed_5653  acyl-CoA dehydrogenase type 2  42.51 
 
 
410 aa  296  5e-79  Sinorhizobium medicae WSM419  Bacteria  normal  0.329683  normal  0.865966 
 
 
-
 
NC_009921  Franean1_2020  acyl-CoA dehydrogenase type 2  45.87 
 
 
394 aa  290  2e-77  Frankia sp. EAN1pec  Bacteria  normal  0.692035  normal  0.294025 
 
 
-
 
NC_010505  Mrad2831_4840  acyl-CoA dehydrogenase type 2  52.75 
 
 
381 aa  285  9e-76  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.910203 
 
 
-
 
NC_009485  BBta_2584  putative acyl-CoA dehydrogenase  42.7 
 
 
398 aa  285  1.0000000000000001e-75  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0375347 
 
 
-
 
NC_011988  Avi_5178  acyl-CoA dehydrogenase-related protein  42.46 
 
 
393 aa  273  4.0000000000000004e-72  Agrobacterium vitis S4  Bacteria  normal  0.897204  n/a   
 
 
-
 
NC_009921  Franean1_3756  acyl-CoA dehydrogenase type 2  40.21 
 
 
418 aa  252  1e-65  Frankia sp. EAN1pec  Bacteria  normal  0.326681  normal 
 
 
-
 
NC_013093  Amir_4313  acyl-CoA dehydrogenase type 2 domain protein  42.29 
 
 
397 aa  249  4e-65  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7179  acyl-CoA dehydrogenase  39.62 
 
 
394 aa  248  1e-64  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_2419  Acyl-CoA dehydrogenase  44.3 
 
 
332 aa  246  6e-64  Frankia sp. CcI3  Bacteria  normal  0.238624  normal  0.291589 
 
 
-
 
NC_009523  RoseRS_0478  acyl-CoA dehydrogenase domain-containing protein  37.37 
 
 
396 aa  231  2e-59  Roseiflexus sp. RS-1  Bacteria  normal  0.859047  normal 
 
 
-
 
NC_009767  Rcas_0150  acyl-CoA dehydrogenase domain-containing protein  36.34 
 
 
394 aa  223  3e-57  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1183  Acyl-CoA dehydrogenase type 2 domain protein  33.87 
 
 
390 aa  211  1e-53  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013205  Aaci_0955  Acyl-CoA dehydrogenase type 2 domain protein  36.36 
 
 
398 aa  200  3.9999999999999996e-50  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_2310  acyl-CoA dehydrogenase type 2  29.75 
 
 
384 aa  184  2.0000000000000003e-45  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.154104  n/a   
 
 
-
 
NC_009632  SaurJH1_2352  acyl-CoA dehydrogenase type 2  29.75 
 
 
384 aa  184  2.0000000000000003e-45  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.657423  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2881  acyl-CoA dehydrogenase type 2  30.03 
 
 
382 aa  166  5.9999999999999996e-40  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.255861  n/a   
 
 
-
 
NC_002976  SERP1866  acyl-CoA dehydrogenase-related protein  28.18 
 
 
381 aa  163  5.0000000000000005e-39  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1626  Acyl-CoA dehydrogenase type 2 domain protein  30.98 
 
 
387 aa  160  3e-38  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2142  putative acyl-CoA dehydrogenase, short-chain specific  29.18 
 
 
382 aa  159  7e-38  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK2818  acyl-CoA dehydrogenase, short-chain specific  29.46 
 
 
382 aa  158  1e-37  Bacillus cereus E33L  Bacteria  normal  0.149479  n/a   
 
 
-
 
NC_005957  BT9727_2857  acyl-CoA dehydrogenase, short-chain specific  28.9 
 
 
382 aa  157  3e-37  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.25076  n/a   
 
 
-
 
NC_011658  BCAH187_A3128  putative acyl-CoA dehydrogenase, short-chain specific  28.9 
 
 
382 aa  157  3e-37  Bacillus cereus AH187  Bacteria  hitchhiker  0.000407188  n/a   
 
 
-
 
NC_013411  GYMC61_2547  Acyl-CoA dehydrogenase type 2 domain protein  32.88 
 
 
392 aa  156  4e-37  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011773  BCAH820_3109  putative acyl-CoA dehydrogenase, short-chain specific  28.9 
 
 
382 aa  155  7e-37  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011725  BCB4264_A3094  putative acyl-CoA dehydrogenase, short-chain specific  28.9 
 
 
382 aa  155  8e-37  Bacillus cereus B4264  Bacteria  normal  0.952201  n/a   
 
 
-
 
NC_005945  BAS2889  acyl-CoA dehydrogenase, short-chain specific  28.9 
 
 
382 aa  154  2e-36  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00742766  n/a   
 
 
-
 
NC_007530  GBAA_3105  acyl-CoA dehydrogenase, short-chain specific  28.9 
 
 
382 aa  154  2e-36  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.362062  n/a   
 
 
-
 
NC_003909  BCE_3126  acyl-CoA dehydrogenase, short-chain specific, putative  28.9 
 
 
382 aa  151  2e-35  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00757934  n/a   
 
 
-
 
NC_009674  Bcer98_2066  acyl-CoA dehydrogenase type 2  27.81 
 
 
384 aa  147  3e-34  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.335702  n/a   
 
 
-
 
NC_008025  Dgeo_1231  Acyl-CoA dehydrogenase, type 2-like protein  33.72 
 
 
384 aa  136  7.000000000000001e-31  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.279686  normal 
 
 
-
 
NC_009972  Haur_2304  acyl-CoA dehydrogenase type 2  30.43 
 
 
392 aa  126  5e-28  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0799931  n/a   
 
 
-
 
NC_008254  Meso_2091  Acyl-CoA dehydrogenase, type 2-like  29.86 
 
 
389 aa  122  9.999999999999999e-27  Chelativorans sp. BNC1  Bacteria  normal  0.424709  n/a   
 
 
-
 
NC_009953  Sare_4695  acyl-CoA dehydrogenase type 2  30.59 
 
 
387 aa  120  3e-26  Salinispora arenicola CNS-205  Bacteria  normal  0.46169  normal  0.258533 
 
 
-
 
NC_010512  Bcenmc03_6843  acyl-CoA dehydrogenase domain-containing protein  28.53 
 
 
393 aa  113  7.000000000000001e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_4265  acyl-CoA dehydrogenase type 2  30.38 
 
 
387 aa  110  3e-23  Salinispora tropica CNB-440  Bacteria  normal  normal  0.184931 
 
 
-
 
NC_013947  Snas_0146  Acyl-CoA dehydrogenase type 2 domain-containing protein  27.13 
 
 
382 aa  109  8.000000000000001e-23  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.658373 
 
 
-
 
NC_013205  Aaci_2056  acyl-CoA dehydrogenase domain protein  28 
 
 
377 aa  109  9.000000000000001e-23  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.232194  n/a   
 
 
-
 
NC_013595  Sros_6601  Acyl-CoA dehydrogenase-like protein  27.65 
 
 
425 aa  104  3e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0223249  normal  0.275726 
 
 
-
 
NC_014212  Mesil_1085  acyl-CoA dehydrogenase domain protein  28.69 
 
 
373 aa  103  4e-21  Meiothermus silvanus DSM 9946  Bacteria  normal  0.863384  normal 
 
 
-
 
NC_009616  Tmel_0656  acyl-CoA dehydrogenase domain-containing protein  25 
 
 
380 aa  101  3e-20  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1126  acyl-CoA dehydrogenase domain-containing protein  27.12 
 
 
373 aa  100  6e-20  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_1179  acyl-CoA dehydrogenase-like protein  27.88 
 
 
392 aa  99.8  8e-20  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0402  acyl-CoA dehydrogenase domain-containing protein  22.53 
 
 
380 aa  99  1e-19  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_1546  acyl-CoA dehydrogenase domain protein  25.41 
 
 
381 aa  99  1e-19  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1881  butyryl-CoA dehydrogenase  23.43 
 
 
379 aa  98.2  2e-19  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.593492  normal  0.222475 
 
 
-
 
NC_013441  Gbro_1029  acyl-CoA dehydrogenase domain protein  26.23 
 
 
387 aa  97.8  3e-19  Gordonia bronchialis DSM 43247  Bacteria  normal  0.239684  n/a   
 
 
-
 
NC_013159  Svir_20400  acyl-CoA dehydrogenase  28.08 
 
 
396 aa  97.4  3e-19  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.170444  normal 
 
 
-
 
NC_010338  Caul_2948  acyl-CoA dehydrogenase domain-containing protein  27.18 
 
 
416 aa  97.1  5e-19  Caulobacter sp. K31  Bacteria  normal  0.0471344  normal 
 
 
-
 
NC_012560  Avin_31480  Acyl-CoA dehydrogenase family protein  30.16 
 
 
424 aa  94.7  2e-18  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1058  acyl-CoA dehydrogenase domain protein  26.3 
 
 
386 aa  94.7  2e-18  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.405365  n/a   
 
 
-
 
NC_011830  Dhaf_2695  acyl-CoA dehydrogenase domain protein  23.04 
 
 
382 aa  95.1  2e-18  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_5260  Acyl-CoA dehydrogenase type 2 domain  27.01 
 
 
426 aa  94.4  3e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  0.997637  normal  0.924081 
 
 
-
 
NC_013216  Dtox_1697  acyl-CoA dehydrogenase domain protein  25.88 
 
 
386 aa  94.4  3e-18  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.0868604  normal 
 
 
-
 
NC_009718  Fnod_0585  acyl-CoA dehydrogenase domain-containing protein  24.23 
 
 
379 aa  94  4e-18  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1843  acyl-CoA dehydrogenase domain protein  24.59 
 
 
380 aa  94  4e-18  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2584  butyryl-CoA dehydrogenase  24.43 
 
 
379 aa  93.2  6e-18  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2286  butyryl-CoA dehydrogenase  24.43 
 
 
379 aa  93.2  6e-18  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3291  acyl-CoA dehydrogenase-like  25.99 
 
 
388 aa  93.2  7e-18  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4353  acyl-CoA dehydrogenase domain protein  26.27 
 
 
385 aa  93.2  7e-18  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_2082  acyl-CoA dehydrogenase domain protein  26.49 
 
 
376 aa  92.4  1e-17  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_007517  Gmet_3306  Acyl-CoA dehydrogenase-like  26.56 
 
 
380 aa  92  1e-17  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0109  putative acyl-CoA dehydrogenase  30.55 
 
 
410 aa  92.4  1e-17  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3567  acyl-CoA dehydrogenase domain-containing protein  26.08 
 
 
382 aa  92.4  1e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1173  Acyl-CoA dehydrogenase type 2 domain protein  28.01 
 
 
383 aa  91.3  2e-17  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3775  acyl-CoA dehydrogenase domain protein  26.63 
 
 
386 aa  91.7  2e-17  Haliangium ochraceum DSM 14365  Bacteria  normal  0.212433  normal  0.155443 
 
 
-
 
NC_002947  PP_0224  DszC family monooxygenase  27.2 
 
 
413 aa  91.3  3e-17  Pseudomonas putida KT2440  Bacteria  normal  0.88641  hitchhiker  0.00688358 
 
 
-
 
NC_013093  Amir_6366  acyl-CoA dehydrogenase domain protein  25.14 
 
 
387 aa  90.9  3e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2643  acyl-CoA dehydrogenase domain protein  23.84 
 
 
371 aa  90.9  3e-17  Brachyspira murdochii DSM 12563  Bacteria  normal  0.475979  n/a   
 
 
-
 
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