Gene Tneu_0539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTneu_0539 
Symbol 
ID6165728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermoproteus neutrophilus V24Sta 
KingdomArchaea 
Replicon accessionNC_010525 
Strand
Start bp490568 
End bp491785 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content63% 
IMG OID641667692 
Productacyl-CoA dehydrogenase domain-containing protein 
Protein accessionYP_001793928 
Protein GI171185009 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00283131 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGTGTTTC CCTTCGAAAG CCTCGTAGAT TTTTCCGTGG TGTTGACTCA GGAACACGAG 
CTGTTTAGGA GGGCTGTGAG GGAGTTCGTG GAGAGGGAGA TCGCACCGAG GGCTCTGGAG
ATCGACGAGA GAGACGAGGC GCCGCTCGAC CTCCTTAGGA AGATGGGGGA GCAGGGCTTC
TTCGGTCTAG AGATCCCGGA GCAGTACGGC GGCCAAGGCG GCGACTACAG GATGGCGGCG
ATACTATCTG AGGAGGTGTC CCGCGCCTCG CCGGGCTTAA GCGTGTACTT CAACTCGGCG
AGGCTCTTCT CCGCCCCTAT TCTCCTCTAC GGGACAGAGG AGCAGAGGCG GAGGTATCTC
CCCCAGATAG CCAGGGGGGA GAAGCTGGCG GCTTTCGCCT CCACGGAGCC CTGCTGCGGC
TCGGACGTAG CCGGCGTAAG GACTAGAGCG CGGCGGGTGG GGGGCAGGTG GGTGATCAAC
GGCAGGAAGG CCTTCATAAG TAGCTCGGAC GTGGCCCACT ACATCCTCGT CCTCGCGAGG
ACCTCCGACC CGCCGGACGC CGGCAGAAGA CACGTGGGCC TCTCCATGTT TGTGGTGGAG
AGGGACGCGC CCGGCGTGAA GGTGGAGCAG TGCTACAGCA AGCTGGGCCT CCGCGGGAAC
CACGCCTGCG AGATCTCGCT CACCGATGTG GAGGTGCCTG AGGAGAGCTT GGTGGGGAGG
GAGGGGATGG GCTTCTACTA CGCCATGGAG GCCTTTAACA GATCCAGAAT CGGCATCGCG
GCCCAGGCGG TGGGGATGGC CCAGGCCGCC TTCGAGAAAG CCTTCGACTA CGCCCACAGG
AGGGAGGCCT TCGGCGTAAA GATAGCGAGC TTCCAGGCGA TCCAGTTCAG CCTAGTGGAG
ATGTTGGCCA AGATCATGAC GGCCCGGCTC TTGACATACA TGGCCGCCAA GCTCGCGGAC
GAGGGCAGGC GGGAGTTCGT CTTCGTGGCG TCGCTCGCCA AATACTACGC CACCGAAGCA
GCCGAAGAGG TGATCTCCGA CGCCGTTGAC GTCTTCGGAG GAGCCGGCGT CGTAAGAGAG
ACGGGGCTGG AGCGGCTGTA TAGAGATGTG AAGATCACCC AGATATACGA GGGGGCCAAC
AACGTCCAGA AGCTGGCGGC TTACCGGCAG CTGGTTAGAC TTCTGCAGGA GAGGGGGACG
CCGCCCGGCG GCGCCTAG
 
Protein sequence
MVFPFESLVD FSVVLTQEHE LFRRAVREFV EREIAPRALE IDERDEAPLD LLRKMGEQGF 
FGLEIPEQYG GQGGDYRMAA ILSEEVSRAS PGLSVYFNSA RLFSAPILLY GTEEQRRRYL
PQIARGEKLA AFASTEPCCG SDVAGVRTRA RRVGGRWVIN GRKAFISSSD VAHYILVLAR
TSDPPDAGRR HVGLSMFVVE RDAPGVKVEQ CYSKLGLRGN HACEISLTDV EVPEESLVGR
EGMGFYYAME AFNRSRIGIA AQAVGMAQAA FEKAFDYAHR REAFGVKIAS FQAIQFSLVE
MLAKIMTARL LTYMAAKLAD EGRREFVFVA SLAKYYATEA AEEVISDAVD VFGGAGVVRE
TGLERLYRDV KITQIYEGAN NVQKLAAYRQ LVRLLQERGT PPGGA