26 homologs were found in PanDaTox collection
for query gene Sama_1473 on replicon NC_008700
Organism: Shewanella amazonensis SB2B



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008700  Sama_1473  hypothetical protein  100 
 
 
268 aa  549  1e-155  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1839  hypothetical protein  42.73 
 
 
275 aa  198  1.0000000000000001e-49  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010501  PputW619_3565  extracellular solute-binding protein  40.16 
 
 
252 aa  195  5.000000000000001e-49  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2113  hypothetical protein  37.45 
 
 
265 aa  192  5e-48  Shewanella denitrificans OS217  Bacteria  normal  0.018771  n/a   
 
 
-
 
NC_002947  PP_4246  periplasmic binding protein  38.91 
 
 
266 aa  192  6e-48  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1618  hypothetical protein  37.26 
 
 
268 aa  192  6e-48  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1622  extracellular solute-binding protein  38.34 
 
 
266 aa  187  2e-46  Pseudomonas putida F1  Bacteria  normal  normal  0.12881 
 
 
-
 
NC_011663  Sbal223_2471  hypothetical protein  39.82 
 
 
281 aa  187  2e-46  Shewanella baltica OS223  Bacteria  normal  0.519475  normal 
 
 
-
 
NC_009997  Sbal195_1854  hypothetical protein  39.82 
 
 
281 aa  187  2e-46  Shewanella baltica OS195  Bacteria  normal  0.549839  normal 
 
 
-
 
NC_009665  Shew185_1807  hypothetical protein  39.82 
 
 
276 aa  187  2e-46  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3812  extracellular solute-binding protein  40.09 
 
 
266 aa  184  2.0000000000000003e-45  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2686  extracellular solute-binding protein  37.66 
 
 
263 aa  182  3e-45  Pseudomonas mendocina ymp  Bacteria  normal  0.0129689  normal  0.492762 
 
 
-
 
NC_009052  Sbal_1815  hypothetical protein  39.38 
 
 
276 aa  182  5.0000000000000004e-45  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1833  hypothetical protein  36.26 
 
 
279 aa  182  5.0000000000000004e-45  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.432848 
 
 
-
 
NC_004578  PSPTO_2024  hypothetical protein  39.74 
 
 
279 aa  182  5.0000000000000004e-45  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.20438  n/a   
 
 
-
 
NC_009439  Pmen_2687  hypothetical protein  37.3 
 
 
261 aa  177  2e-43  Pseudomonas mendocina ymp  Bacteria  normal  0.0951528  normal  0.504159 
 
 
-
 
NC_007492  Pfl01_3943  periplasmic binding protein  36.29 
 
 
277 aa  165  6.9999999999999995e-40  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.929168  normal 
 
 
-
 
NC_009665  Shew185_1878  amino acid ABC transporter periplasmic protein  31.88 
 
 
246 aa  134  1.9999999999999998e-30  Shewanella baltica OS185  Bacteria  normal  0.201916  n/a   
 
 
-
 
NC_010725  Mpop_2259  TRAP-type uncharacterized transport system periplasmic component-like protein  29.58 
 
 
469 aa  45.8  0.0008  Methylobacterium populi BJ001  Bacteria  normal  0.466386  normal  0.36502 
 
 
-
 
NC_010172  Mext_2302  TRAP-type uncharacterized transport system periplasmic component-like protein  29.17 
 
 
474 aa  45.1  0.001  Methylobacterium extorquens PA1  Bacteria  normal  0.172272  hitchhiker  0.00762339 
 
 
-
 
NC_009438  Sputcn32_2732  extracellular solute-binding protein  23.4 
 
 
284 aa  44.7  0.002  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1275  extracellular solute-binding protein  22.96 
 
 
285 aa  43.9  0.003  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000731969  n/a   
 
 
-
 
NC_009997  Sbal195_1308  extracellular solute-binding protein  22.96 
 
 
285 aa  43.5  0.003  Shewanella baltica OS195  Bacteria  normal  0.178396  normal  0.999326 
 
 
-
 
NC_011663  Sbal223_3082  extracellular solute-binding protein family 3  22.96 
 
 
285 aa  43.9  0.003  Shewanella baltica OS223  Bacteria  hitchhiker  0.00109919  hitchhiker  0.00184496 
 
 
-
 
NC_011757  Mchl_2577  TRAP-type uncharacterized transport system periplasmic component-like protein  28.87 
 
 
469 aa  43.1  0.004  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.301233 
 
 
-
 
NC_009052  Sbal_1231  extracellular solute-binding protein  22.57 
 
 
285 aa  42.4  0.008  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000126239  n/a   
 
 
-
 
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