13 homologs were found in PanDaTox collection
for query gene Rpic12D_4765 on replicon NC_012855
Organism: Ralstonia pickettii 12D



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012855  Rpic12D_4765  hypothetical protein  100 
 
 
471 aa  950    Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010679  Bphyt_7249  hypothetical protein  32.74 
 
 
426 aa  164  2.0000000000000002e-39  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007972  Rmet_6288  hypothetical protein  32.8 
 
 
406 aa  154  2.9999999999999998e-36  Cupriavidus metallidurans CH34  Bacteria  normal  0.110727  normal 
 
 
-
 
NC_013421  Pecwa_1761  putative type IV prepilin  25.53 
 
 
512 aa  70.9  0.00000000004  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1581  putative type IV prepilin  24.66 
 
 
482 aa  67.8  0.0000000005  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B2071  prepilin-type N- cleavage/methylation domain protein  23.61 
 
 
478 aa  63.2  0.00000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00288729  n/a   
 
 
-
 
NC_008786  Veis_3698  hypothetical protein  25.46 
 
 
413 aa  55.8  0.000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0151181  normal 
 
 
-
 
NC_008757  Pnap_4335  hypothetical protein  28.37 
 
 
527 aa  53.5  0.000009  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0208708  normal  0.938438 
 
 
-
 
NC_010087  Bmul_5558  hypothetical protein  25.61 
 
 
400 aa  52.8  0.00001  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.363207  normal  0.0854155 
 
 
-
 
NC_009708  YpsIP31758_3727  shufflon protein  23.16 
 
 
425 aa  52  0.00002  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007901  Rfer_4492  methylation  24.58 
 
 
523 aa  47.8  0.0005  Rhodoferax ferrireducens T118  Bacteria  n/a    n/a   
 
 
-
 
NC_011081  SeHA_A0109  shufflon protein B'  28.8 
 
 
448 aa  47  0.0007  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4478  type IV pilus protein PilV  24.39 
 
 
459 aa  44.7  0.004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>