14 homologs were found in PanDaTox collection
for query gene Rpal_4987 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_4987  hypothetical protein  100 
 
 
257 aa  528  1e-149  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4315  hypothetical protein  93.77 
 
 
256 aa  492  9.999999999999999e-139  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.950445 
 
 
-
 
NC_007958  RPD_4210  hypothetical protein  93 
 
 
257 aa  492  9.999999999999999e-139  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4378  hypothetical protein  94.24 
 
 
262 aa  469  1.0000000000000001e-131  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.796058  normal  0.0281259 
 
 
-
 
NC_007964  Nham_3235  hypothetical protein  89.39 
 
 
252 aa  458  9.999999999999999e-129  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2312  hypothetical protein  85.99 
 
 
253 aa  452  1.0000000000000001e-126  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0886961  normal 
 
 
-
 
NC_009485  BBta_6600  hypothetical protein  42.44 
 
 
217 aa  159  5e-38  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0426  putative mobilization protein MobD  22.94 
 
 
242 aa  68.6  0.00000000009  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_2956  putative mobilization protein MobD  21.37 
 
 
230 aa  63.9  0.000000003  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1729  hypothetical protein  24.36 
 
 
231 aa  52.8  0.000005  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2341  hypothetical protein  24.36 
 
 
231 aa  52.8  0.000005  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_2364  putative mobilization protein MobD  24.36 
 
 
231 aa  52.8  0.000006  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007412  Ava_C0197  hypothetical protein  19.75 
 
 
302 aa  44.3  0.002  Anabaena variabilis ATCC 29413  Bacteria  normal  hitchhiker  0.00393973 
 
 
-
 
NC_007964  Nham_3236  hypothetical protein  26.27 
 
 
225 aa  43.9  0.002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
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