60 homologs were found in PanDaTox collection
for query gene Psyr_2998 on replicon NC_007005
Organism: Pseudomonas syringae pv. syringae B728a



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007005  Psyr_2998  hypothetical protein  100 
 
 
337 aa  672    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3131  hypothetical protein  89.32 
 
 
337 aa  613  9.999999999999999e-175  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.470644  n/a   
 
 
-
 
NC_007492  Pfl01_2543  hypothetical protein  67.5 
 
 
332 aa  430  1e-119  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.730703 
 
 
-
 
NC_002947  PP_3259  acyl-CoA dehydrogenase-related protein  57.55 
 
 
347 aa  332  7.000000000000001e-90  Pseudomonas putida KT2440  Bacteria  normal  0.543921  normal 
 
 
-
 
NC_009512  Pput_2502  hypothetical protein  57.23 
 
 
347 aa  328  7e-89  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2636  acyl-CoA dehydrogenase  53.09 
 
 
347 aa  316  4e-85  Pseudomonas putida GB-1  Bacteria  normal  0.292935  normal  0.528602 
 
 
-
 
NC_010681  Bphyt_2240  putative acyl-CoA dehydrogenase-related protein  52.28 
 
 
392 aa  301  8.000000000000001e-81  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2652  acyl-CoA dehydrogenase  52.47 
 
 
347 aa  296  3e-79  Pseudomonas putida W619  Bacteria  normal  0.530272  normal  0.685897 
 
 
-
 
NC_010002  Daci_5871  putative acyl-CoA dehydrogenase-related protein  50.45 
 
 
363 aa  295  9e-79  Delftia acidovorans SPH-1  Bacteria  normal  0.845489  normal  0.406047 
 
 
-
 
NC_007951  Bxe_A2027  putative acyl-CoA dehydrogenase-related protein  53.67 
 
 
335 aa  290  3e-77  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5416  putative acyl-CoA dehydrogenase-related protein  50.46 
 
 
388 aa  289  4e-77  Burkholderia phymatum STM815  Bacteria  normal  normal  0.699876 
 
 
-
 
NC_007348  Reut_B4937  acyl-CoA dehydrogenase-related protein  45.9 
 
 
334 aa  236  5.0000000000000005e-61  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1801  putative acyl-CoA dehydrogenase-related protein  36.86 
 
 
362 aa  210  3e-53  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.162926 
 
 
-
 
NC_013441  Gbro_0202  hypothetical protein  43.05 
 
 
333 aa  207  2e-52  Gordonia bronchialis DSM 43247  Bacteria  normal  0.499323  n/a   
 
 
-
 
NC_013521  Sked_20110  hypothetical protein  40.38 
 
 
382 aa  181  1e-44  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.252423  normal  0.481515 
 
 
-
 
NC_014151  Cfla_0512  hypothetical protein  39.46 
 
 
338 aa  178  1e-43  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0189199  decreased coverage  0.000000311595 
 
 
-
 
NC_013093  Amir_2567  putative acyl-CoA dehydrogenase-related protein  40.52 
 
 
359 aa  176  4e-43  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752192  n/a   
 
 
-
 
NC_009338  Mflv_0021  dehydrogenase  42.86 
 
 
313 aa  149  7e-35  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0755375  normal 
 
 
-
 
NC_013235  Namu_3272  putative acyl-CoA dehydrogenase-related protein  40.13 
 
 
396 aa  148  1.0000000000000001e-34  Nakamurella multipartita DSM 44233  Bacteria  decreased coverage  0.00000123433  hitchhiker  0.0000576183 
 
 
-
 
NC_012803  Mlut_01080  hypothetical protein  36.84 
 
 
372 aa  139  4.999999999999999e-32  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0555  hypothetical protein  35.53 
 
 
350 aa  139  4.999999999999999e-32  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_0335  hypothetical protein  34.17 
 
 
341 aa  137  3.0000000000000003e-31  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4305  Acyl-CoA dehydrogenase type 2 domain  32.27 
 
 
412 aa  105  2e-21  Methylobacterium populi BJ001  Bacteria  normal  0.0499711  normal 
 
 
-
 
NC_010725  Mpop_0138  cyclic nucleotide-binding protein  31.58 
 
 
382 aa  99.4  8e-20  Methylobacterium populi BJ001  Bacteria  normal  0.363055  normal  0.0562136 
 
 
-
 
NC_010172  Mext_3848  acyl-CoA dehydrogenase type 2  32.18 
 
 
391 aa  98.6  1e-19  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.680066 
 
 
-
 
NC_011757  Mchl_4157  Acyl-CoA dehydrogenase type 2 domain  31.83 
 
 
391 aa  95.1  2e-18  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0737881  normal 
 
 
-
 
NC_010505  Mrad2831_3329  acyl-CoA dehydrogenase type 2  31.01 
 
 
382 aa  93.2  6e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.684525  normal 
 
 
-
 
NC_011666  Msil_3593  acyl-CoA dehydrogenase domain protein  31.16 
 
 
385 aa  85.1  0.000000000000001  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_4098  acyl-CoA dehydrogenase  27.44 
 
 
373 aa  77.4  0.0000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.461592  normal  0.148654 
 
 
-
 
NC_011365  Gdia_0796  Acyl-CoA dehydrogenase-like protein  28.62 
 
 
381 aa  76.3  0.0000000000008  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.585612  normal  0.628725 
 
 
-
 
NC_008148  Rxyl_1346  hypothetical protein  27.74 
 
 
364 aa  68.9  0.0000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0806475  n/a   
 
 
-
 
NC_013730  Slin_2922  Acyl-CoA dehydrogenase type 2 domain protein  23.58 
 
 
391 aa  66.6  0.0000000005  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0575  Acyl-CoA dehydrogenase  26.3 
 
 
322 aa  63.9  0.000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2915  hypothetical protein  25.83 
 
 
405 aa  54.7  0.000002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.281087  n/a   
 
 
-
 
NC_010501  PputW619_4989  acyl-CoA dehydrogenase type 2  27.02 
 
 
393 aa  53.1  0.000007  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0223  DszC family monooxygenase  26.64 
 
 
406 aa  52.8  0.000009  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.00885592  hitchhiker  0.00679283 
 
 
-
 
NC_009512  Pput_0238  acyl-CoA dehydrogenase type 2  26.64 
 
 
393 aa  52.4  0.00001  Pseudomonas putida F1  Bacteria  normal  0.679999  normal  0.247147 
 
 
-
 
NC_010322  PputGB1_0247  acyl-CoA dehydrogenase type 2  26.64 
 
 
393 aa  51.6  0.00002  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0353  Acyl-CoA dehydrogenase, C-terminal  31.28 
 
 
401 aa  51.2  0.00003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.758482 
 
 
-
 
NC_008463  PA14_34300  DszC family monooxygenase  27.86 
 
 
405 aa  51.2  0.00003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.803163  normal  0.0145718 
 
 
-
 
NC_009511  Swit_1842  acyl-CoA dehydrogenase domain-containing protein  25.34 
 
 
387 aa  50.1  0.00006  Sphingomonas wittichii RW1  Bacteria  normal  0.982054  normal 
 
 
-
 
NC_004578  PSPTO_5185  acyl-CoA dehydrogenase family protein  30.99 
 
 
401 aa  49.7  0.00006  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4988  acyl-CoA dehydrogenase type 2  27.33 
 
 
413 aa  49.7  0.00007  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0224  DszC family monooxygenase  27.75 
 
 
413 aa  47.4  0.0003  Pseudomonas putida KT2440  Bacteria  normal  0.88641  hitchhiker  0.00688358 
 
 
-
 
NC_010581  Bind_1847  acyl-CoA dehydrogenase type 2  40.3 
 
 
382 aa  47.4  0.0003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.25699  normal 
 
 
-
 
NC_010581  Bind_2053  acyl-CoA dehydrogenase type 2  29.94 
 
 
403 aa  46.6  0.0005  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0239  acyl-CoA dehydrogenase type 2  27.75 
 
 
413 aa  46.6  0.0006  Pseudomonas putida F1  Bacteria  normal  normal  0.238794 
 
 
-
 
NC_010322  PputGB1_0248  acyl-CoA dehydrogenase type 2  27.75 
 
 
413 aa  46.2  0.0008  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0894  acyl-CoA dehydrogenase type 2  29.44 
 
 
396 aa  46.2  0.0009  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0403335 
 
 
-
 
NC_008025  Dgeo_1231  Acyl-CoA dehydrogenase, type 2-like protein  36.23 
 
 
384 aa  45.1  0.002  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.279686  normal 
 
 
-
 
NC_007406  Nwi_2158  acyl-CoA dehydrogenase  27.78 
 
 
381 aa  45.1  0.002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.337808 
 
 
-
 
NC_014158  Tpau_3069  acyl-CoA dehydrogenase domain protein  27.6 
 
 
387 aa  45.1  0.002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.117634  n/a   
 
 
-
 
NC_010322  PputGB1_2538  acyl-CoA dehydrogenase type 2  28.03 
 
 
378 aa  44.3  0.003  Pseudomonas putida GB-1  Bacteria  normal  0.844573  decreased coverage  0.00557828 
 
 
-
 
NC_009719  Plav_2898  acyl-CoA dehydrogenase domain-containing protein  29.17 
 
 
379 aa  44.3  0.003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  hitchhiker  0.000249127 
 
 
-
 
NC_007492  Pfl01_0239  Acyl-CoA dehydrogenase-like  25 
 
 
397 aa  44.3  0.003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_2304  acyl-CoA dehydrogenase type 2  40.62 
 
 
392 aa  43.1  0.007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0799931  n/a   
 
 
-
 
NC_007492  Pfl01_3917  Acyl-CoA dehydrogenase-like  25.28 
 
 
395 aa  42.7  0.009  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0354  Acyl-CoA dehydrogenase, C-terminal  25.27 
 
 
440 aa  42.7  0.009  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_2659  acyl-CoA dehydrogenase type 2  29.63 
 
 
390 aa  42.4  0.01  Caulobacter sp. K31  Bacteria  normal  normal  0.387509 
 
 
-
 
NC_014158  Tpau_1370  Acyl-CoA dehydrogenase type 2 domain protein  37.33 
 
 
395 aa  42.7  0.01  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
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