52 homologs were found in PanDaTox collection
for query gene PputW619_2652 on replicon NC_010501
Organism: Pseudomonas putida W619



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010501  PputW619_2652  acyl-CoA dehydrogenase  100 
 
 
347 aa  694    Pseudomonas putida W619  Bacteria  normal  0.530272  normal  0.685897 
 
 
-
 
NC_009512  Pput_2502  hypothetical protein  81.84 
 
 
347 aa  588  1e-167  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3259  acyl-CoA dehydrogenase-related protein  82.42 
 
 
347 aa  589  1e-167  Pseudomonas putida KT2440  Bacteria  normal  0.543921  normal 
 
 
-
 
NC_010322  PputGB1_2636  acyl-CoA dehydrogenase  81.56 
 
 
347 aa  580  1e-164  Pseudomonas putida GB-1  Bacteria  normal  0.292935  normal  0.528602 
 
 
-
 
NC_007492  Pfl01_2543  hypothetical protein  53.19 
 
 
332 aa  325  8.000000000000001e-88  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.730703 
 
 
-
 
NC_004578  PSPTO_3131  hypothetical protein  55.52 
 
 
337 aa  318  7.999999999999999e-86  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.470644  n/a   
 
 
-
 
NC_007005  Psyr_2998  hypothetical protein  52.47 
 
 
337 aa  312  6.999999999999999e-84  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5416  putative acyl-CoA dehydrogenase-related protein  55.41 
 
 
388 aa  299  5e-80  Burkholderia phymatum STM815  Bacteria  normal  normal  0.699876 
 
 
-
 
NC_010681  Bphyt_2240  putative acyl-CoA dehydrogenase-related protein  51.57 
 
 
392 aa  286  5e-76  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A2027  putative acyl-CoA dehydrogenase-related protein  53.51 
 
 
335 aa  283  3.0000000000000004e-75  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5871  putative acyl-CoA dehydrogenase-related protein  50 
 
 
363 aa  280  2e-74  Delftia acidovorans SPH-1  Bacteria  normal  0.845489  normal  0.406047 
 
 
-
 
NC_007348  Reut_B4937  acyl-CoA dehydrogenase-related protein  46.81 
 
 
334 aa  268  1e-70  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1801  putative acyl-CoA dehydrogenase-related protein  39.58 
 
 
362 aa  233  5e-60  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.162926 
 
 
-
 
NC_013093  Amir_2567  putative acyl-CoA dehydrogenase-related protein  42.96 
 
 
359 aa  185  9e-46  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752192  n/a   
 
 
-
 
NC_013441  Gbro_0202  hypothetical protein  42.71 
 
 
333 aa  182  7e-45  Gordonia bronchialis DSM 43247  Bacteria  normal  0.499323  n/a   
 
 
-
 
NC_014151  Cfla_0512  hypothetical protein  41.33 
 
 
338 aa  182  9.000000000000001e-45  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0189199  decreased coverage  0.000000311595 
 
 
-
 
NC_013521  Sked_20110  hypothetical protein  36.49 
 
 
382 aa  172  9e-42  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.252423  normal  0.481515 
 
 
-
 
NC_008541  Arth_0335  hypothetical protein  36.27 
 
 
341 aa  162  7e-39  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0021  dehydrogenase  44.26 
 
 
313 aa  159  6e-38  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0755375  normal 
 
 
-
 
NC_011886  Achl_0555  hypothetical protein  39.2 
 
 
350 aa  156  5.0000000000000005e-37  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013235  Namu_3272  putative acyl-CoA dehydrogenase-related protein  41.86 
 
 
396 aa  154  2.9999999999999998e-36  Nakamurella multipartita DSM 44233  Bacteria  decreased coverage  0.00000123433  hitchhiker  0.0000576183 
 
 
-
 
NC_012803  Mlut_01080  hypothetical protein  36.57 
 
 
372 aa  139  7e-32  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3329  acyl-CoA dehydrogenase type 2  32.67 
 
 
382 aa  100  5e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.684525  normal 
 
 
-
 
NC_010725  Mpop_0138  cyclic nucleotide-binding protein  30.84 
 
 
382 aa  95.5  1e-18  Methylobacterium populi BJ001  Bacteria  normal  0.363055  normal  0.0562136 
 
 
-
 
NC_007958  RPD_0575  Acyl-CoA dehydrogenase  30 
 
 
322 aa  85.5  0.000000000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_0796  Acyl-CoA dehydrogenase-like protein  28.28 
 
 
381 aa  84.7  0.000000000000002  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.585612  normal  0.628725 
 
 
-
 
NC_010172  Mext_3848  acyl-CoA dehydrogenase type 2  31.54 
 
 
391 aa  84.7  0.000000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.680066 
 
 
-
 
NC_007778  RPB_4098  acyl-CoA dehydrogenase  28.83 
 
 
373 aa  82  0.00000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.461592  normal  0.148654 
 
 
-
 
NC_011757  Mchl_4157  Acyl-CoA dehydrogenase type 2 domain  31.18 
 
 
391 aa  81.3  0.00000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0737881  normal 
 
 
-
 
NC_013730  Slin_2922  Acyl-CoA dehydrogenase type 2 domain protein  26.75 
 
 
391 aa  81.6  0.00000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4305  Acyl-CoA dehydrogenase type 2 domain  30.48 
 
 
412 aa  79.3  0.00000000000008  Methylobacterium populi BJ001  Bacteria  normal  0.0499711  normal 
 
 
-
 
NC_011666  Msil_3593  acyl-CoA dehydrogenase domain protein  29.28 
 
 
385 aa  77.8  0.0000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008148  Rxyl_1346  hypothetical protein  25.58 
 
 
364 aa  73.2  0.000000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0806475  n/a   
 
 
-
 
NC_010322  PputGB1_3342  acyl-CoA dehydrogenase type 2  27.35 
 
 
410 aa  51.6  0.00002  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2362  acyl-CoA dehydrogenase type 2  27 
 
 
399 aa  52  0.00002  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00266653  hitchhiker  0.00112869 
 
 
-
 
NC_010581  Bind_2053  acyl-CoA dehydrogenase type 2  28.57 
 
 
403 aa  50.8  0.00003  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_31490  Acyl-CoA dehydrogenase family protein  27.42 
 
 
402 aa  48.5  0.0002  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2915  hypothetical protein  26.91 
 
 
405 aa  47.8  0.0003  Pseudomonas aeruginosa PA7  Bacteria  normal  0.281087  n/a   
 
 
-
 
NC_002947  PP_0223  DszC family monooxygenase  26.56 
 
 
406 aa  47  0.0004  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.00885592  hitchhiker  0.00679283 
 
 
-
 
NC_009512  Pput_0238  acyl-CoA dehydrogenase type 2  26.56 
 
 
393 aa  47.4  0.0004  Pseudomonas putida F1  Bacteria  normal  0.679999  normal  0.247147 
 
 
-
 
NC_007005  Psyr_0353  Acyl-CoA dehydrogenase, C-terminal  28.68 
 
 
401 aa  47  0.0005  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.758482 
 
 
-
 
NC_010322  PputGB1_0247  acyl-CoA dehydrogenase type 2  26.97 
 
 
393 aa  46.2  0.0007  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4989  acyl-CoA dehydrogenase type 2  27.66 
 
 
393 aa  45.8  0.001  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_34300  DszC family monooxygenase  26.51 
 
 
405 aa  45.4  0.001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.803163  normal  0.0145718 
 
 
-
 
NC_011981  Avi_7189  acyl-CoA dehydrogenase  26.32 
 
 
412 aa  45.4  0.002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2549  putative acyl-CoA dehydrogenase  34.48 
 
 
434 aa  45.1  0.002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.354355  normal  0.569351 
 
 
-
 
NC_004578  PSPTO_5185  acyl-CoA dehydrogenase family protein  27.94 
 
 
401 aa  45.1  0.002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4988  acyl-CoA dehydrogenase type 2  28.99 
 
 
413 aa  43.9  0.004  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_31480  Acyl-CoA dehydrogenase family protein  28.4 
 
 
424 aa  43.1  0.006  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0224  DszC family monooxygenase  27.81 
 
 
413 aa  42.7  0.009  Pseudomonas putida KT2440  Bacteria  normal  0.88641  hitchhiker  0.00688358 
 
 
-
 
NC_010322  PputGB1_0248  acyl-CoA dehydrogenase type 2  27.81 
 
 
413 aa  42.7  0.01  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP1866  acyl-CoA dehydrogenase-related protein  23.94 
 
 
381 aa  42.7  0.01  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
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