25 homologs were found in PanDaTox collection
for query gene Cphy_2879 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_2879  DNA-directed RNA polymerase, omega subunit  100 
 
 
82 aa  166  1e-40  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000467592  n/a   
 
 
-
 
NC_009012  Cthe_1314  DNA-directed RNA polymerase, omega subunit  40 
 
 
78 aa  57  0.00000008  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.519815  n/a   
 
 
-
 
NC_008261  CPF_2000  DNA-directed RNA polymerase subunit omega  44.62 
 
 
70 aa  56.6  0.0000001  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1718  DNA-directed RNA polymerase subunit omega  44.62 
 
 
70 aa  56.6  0.0000001  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1790  DNA-directed RNA polymerase, omega subunit  34.25 
 
 
68 aa  50.8  0.000007  Clostridium cellulolyticum H10  Bacteria  normal  0.370584  n/a   
 
 
-
 
NC_007760  Adeh_3590  DNA-directed RNA polymerase, omega subunit  42 
 
 
88 aa  49.7  0.00002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3731  DNA-directed RNA polymerase, omega subunit  42 
 
 
88 aa  49.7  0.00002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3657  DNA-directed RNA polymerase, omega subunit  42 
 
 
88 aa  49.7  0.00002  Anaeromyxobacter sp. K  Bacteria  normal  0.284289  n/a   
 
 
-
 
NC_013171  Apre_0961  DNA-directed RNA polymerase, omega subunit  40 
 
 
62 aa  47  0.0001  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.0127007  n/a   
 
 
-
 
NC_010718  Nther_1330  DNA-directed RNA polymerase, omega subunit  43.48 
 
 
63 aa  44.3  0.0005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  decreased coverage  0.00000123249  normal  0.453103 
 
 
-
 
NC_008789  Hhal_0970  DNA-directed RNA polymerase subunit omega  43.48 
 
 
123 aa  44.7  0.0005  Halorhodospira halophila SL1  Bacteria  normal  0.528161  n/a   
 
 
-
 
NC_009675  Anae109_3711  DNA-directed RNA polymerase, omega subunit  38 
 
 
88 aa  44.3  0.0005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1949  DNA-directed RNA polymerase subunit omega  36.36 
 
 
66 aa  43.9  0.0007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_1472  DNA-directed RNA polymerase, omega subunit  41.94 
 
 
106 aa  43.9  0.0007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.111118  n/a   
 
 
-
 
NC_013422  Hneap_0034  DNA-directed RNA polymerase, omega subunit  43.48 
 
 
107 aa  43.9  0.0008  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1760  DNA-directed RNA polymerase subunit omega  36.92 
 
 
70 aa  42.4  0.002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0635  DNA-directed RNA polymerase, omega subunit  39.66 
 
 
70 aa  42.4  0.002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3844  DNA-directed RNA polymerase subunit omega  37.5 
 
 
68 aa  42.4  0.002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010513  Xfasm12_0842  DNA-directed RNA polymerase subunit omega  38.71 
 
 
98 aa  42  0.003  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0755  DNA-directed RNA polymerase subunit omega  40.82 
 
 
111 aa  40.8  0.007  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0265  DNA-directed RNA polymerase subunit omega  38.3 
 
 
92 aa  40.8  0.007  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_2004  DNA-directed RNA polymerase subunit omega  40.43 
 
 
86 aa  40.4  0.008  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.159154 
 
 
-
 
NC_007204  Psyc_1724  DNA-directed RNA polymerase subunit omega  40.43 
 
 
86 aa  40.4  0.008  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.624474 
 
 
-
 
NC_007520  Tcr_2143  DNA-directed RNA polymerase, omega subunit  36.96 
 
 
74 aa  40  0.01  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1213  RNA polymerase, omega subunit  32.76 
 
 
86 aa  40  0.01  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.492791  n/a   
 
 
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