155 homologs were found in PanDaTox collection
for query gene Rru_A3398 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A3398  XRE family transcriptional regulator  100 
 
 
180 aa  363  1e-100  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_0021  XRE family transcriptional regulator  44 
 
 
161 aa  124  5e-28  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3598  XRE family transcriptional regulator  53.33 
 
 
156 aa  118  3.9999999999999996e-26  Rhodospirillum rubrum ATCC 11170  Bacteria  hitchhiker  0.00212083  n/a   
 
 
-
 
NC_007643  Rru_A3775  XRE family transcriptional regulator  45.86 
 
 
210 aa  115  3.9999999999999997e-25  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0443  transcriptional regulator  43.18 
 
 
140 aa  112  3e-24  Agrobacterium vitis S4  Bacteria  unclonable  0.0000554716  n/a   
 
 
-
 
NC_009719  Plav_3622  XRE family transcriptional regulator  40.3 
 
 
147 aa  112  3e-24  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1892  XRE family transcriptional regulator  47.24 
 
 
120 aa  111  4.0000000000000004e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0540  XRE family transcriptional regulator  47.24 
 
 
120 aa  111  4.0000000000000004e-24  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0675  XRE family transcriptional regulator  47.24 
 
 
120 aa  111  4.0000000000000004e-24  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  decreased coverage  0.00325967 
 
 
-
 
NC_012850  Rleg_0016  transcriptional regulator, XRE family  42.54 
 
 
138 aa  110  1.0000000000000001e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.000711578 
 
 
-
 
NC_009636  Smed_0045  XRE family transcriptional regulator  41.67 
 
 
139 aa  109  2.0000000000000002e-23  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00000742068  hitchhiker  0.0000000000614145 
 
 
-
 
NC_008254  Meso_3923  XRE family transcriptional regulator  44.36 
 
 
140 aa  108  5e-23  Chelativorans sp. BNC1  Bacteria  normal  0.680179  n/a   
 
 
-
 
NC_009952  Dshi_2775  putative transcriptional regulator  47.24 
 
 
123 aa  108  5e-23  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0753  XRE family transcriptional regulator  43.18 
 
 
135 aa  108  6e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.057083  n/a   
 
 
-
 
NC_011365  Gdia_2104  transcriptional regulator, XRE family  39.74 
 
 
174 aa  106  2e-22  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR2159  Cro/CI family transcriptional regulator  43.18 
 
 
137 aa  106  2e-22  Brucella suis 1330  Bacteria  unclonable  0.00000314405  n/a   
 
 
-
 
NC_011369  Rleg2_0014  transcriptional regulator, XRE family  40.91 
 
 
139 aa  106  2e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.881591  normal  0.120221 
 
 
-
 
NC_009505  BOV_2071  Cro/CI family transcriptional regulator  43.18 
 
 
137 aa  106  2e-22  Brucella ovis ATCC 25840  Bacteria  normal  0.0247654  n/a   
 
 
-
 
NC_010335  Caul_5225  XRE family transcriptional regulator  43.94 
 
 
140 aa  105  2e-22  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0026  XRE family transcriptional regulator  44.03 
 
 
144 aa  105  3e-22  Caulobacter sp. K31  Bacteria  normal  0.153059  normal  0.660956 
 
 
-
 
NC_010338  Caul_0834  XRE family transcriptional regulator  47.73 
 
 
145 aa  105  3e-22  Caulobacter sp. K31  Bacteria  normal  0.211274  normal  0.760334 
 
 
-
 
NC_011982  Avi_8067  transcriptional regulator  41.67 
 
 
146 aa  103  2e-21  Agrobacterium vitis S4  Bacteria  normal  0.262846  n/a   
 
 
-
 
NC_011666  Msil_2892  transcriptional regulator, XRE family  39.16 
 
 
166 aa  102  2e-21  Methylocella silvestris BL2  Bacteria  n/a    normal  0.203012 
 
 
-
 
NC_007406  Nwi_0019  XRE family transcriptional regulator  40.29 
 
 
139 aa  102  4e-21  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.0558597 
 
 
-
 
NC_010338  Caul_1020  XRE family transcriptional regulator  45.74 
 
 
149 aa  102  4e-21  Caulobacter sp. K31  Bacteria  normal  0.638142  normal 
 
 
-
 
NC_007925  RPC_0473  XRE family transcriptional regulator  39.72 
 
 
138 aa  100  9e-21  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.54052 
 
 
-
 
NC_009720  Xaut_1815  XRE family transcriptional regulator  38.41 
 
 
137 aa  100  1e-20  Xanthobacter autotrophicus Py2  Bacteria  normal  0.0843474  normal  0.166838 
 
 
-
 
NC_010338  Caul_0329  XRE family transcriptional regulator  45.45 
 
 
171 aa  100  1e-20  Caulobacter sp. K31  Bacteria  normal  0.846996  normal 
 
 
-
 
NC_011894  Mnod_0230  transcriptional regulator, XRE family  40 
 
 
137 aa  99.8  2e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.737224  n/a   
 
 
-
 
NC_007802  Jann_1232  XRE family transcriptional regulator  40.94 
 
 
126 aa  99.4  2e-20  Jannaschia sp. CCS1  Bacteria  normal  0.236768  normal  0.265611 
 
 
-
 
NC_007964  Nham_0026  XRE family transcriptional regulator  39.01 
 
 
139 aa  99.8  2e-20  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1909  XRE family transcriptional regulator  40.94 
 
 
123 aa  99.4  2e-20  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3177  XRE family transcriptional regulator  37.32 
 
 
142 aa  99.4  2e-20  Methylobacterium sp. 4-46  Bacteria  normal  0.0647326  normal  0.0138701 
 
 
-
 
NC_009620  Smed_4530  XRE family transcriptional regulator  38.93 
 
 
152 aa  99.4  3e-20  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1388  XRE family transcriptional regulator  42.98 
 
 
119 aa  98.6  4e-20  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.346177 
 
 
-
 
NC_011004  Rpal_0447  transcriptional regulator, XRE family  38.85 
 
 
139 aa  98.2  5e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2278  XRE family transcriptional regulator  41.84 
 
 
136 aa  97.8  7e-20  Caulobacter sp. K31  Bacteria  normal  0.504941  normal 
 
 
-
 
NC_007778  RPB_0595  XRE family transcriptional regulator  38.13 
 
 
139 aa  97.1  1e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.958783  normal 
 
 
-
 
NC_007958  RPD_0237  XRE family transcriptional regulator  38.13 
 
 
139 aa  97.1  1e-19  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3578  XRE family transcriptional regulator  47.83 
 
 
140 aa  96.3  2e-19  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3242  XRE family transcriptional regulator  39.01 
 
 
149 aa  94.4  7e-19  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0051  XRE family transcriptional regulator  35.21 
 
 
138 aa  94  1e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0278  XRE family transcriptional regulator  50.63 
 
 
145 aa  92.8  2e-18  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_3038  XRE family transcriptional regulator  38.57 
 
 
140 aa  92.8  2e-18  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1061  XRE family transcriptional regulator  38.41 
 
 
155 aa  92.8  2e-18  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.161431  normal  0.803902 
 
 
-
 
NC_008783  BARBAKC583_1248  DNA-binding protein  39.53 
 
 
137 aa  90.5  1e-17  Bartonella bacilliformis KC583  Bacteria  normal  0.821781  n/a   
 
 
-
 
NC_011371  Rleg2_6504  transcriptional regulator, XRE family  57.35 
 
 
152 aa  90.5  1e-17  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3208  transcriptional regulator, XRE family  39.1 
 
 
141 aa  89.4  2e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011981  Avi_7073  transcriptional regulator  43.18 
 
 
138 aa  89.4  3e-17  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2959  transcriptional regulator, XRE family  36.76 
 
 
141 aa  86.7  2e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.676432  normal  0.753241 
 
 
-
 
NC_012852  Rleg_6091  transcriptional regulator, XRE family  55.22 
 
 
152 aa  86.7  2e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4795  transcriptional regulator, XRE family  55.41 
 
 
134 aa  85.9  3e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0939257  normal 
 
 
-
 
NC_010338  Caul_1149  XRE family transcriptional regulator  44.26 
 
 
120 aa  85.5  3e-16  Caulobacter sp. K31  Bacteria  normal  0.016899  hitchhiker  0.00000234075 
 
 
-
 
NC_008347  Mmar10_2505  XRE family transcriptional regulator  45.24 
 
 
128 aa  83.6  0.000000000000001  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_007354  Ecaj_0894  transcriptional regulator  44.21 
 
 
215 aa  83.6  0.000000000000002  Ehrlichia canis str. Jake  Bacteria  normal  n/a   
 
 
-
 
NC_007799  ECH_1118  putative transcriptional regulator  45.78 
 
 
213 aa  82.4  0.000000000000003  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_6040  transcriptional regulator, XRE family  35.17 
 
 
134 aa  82.4  0.000000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.591688 
 
 
-
 
NC_010338  Caul_1221  XRE family transcriptional regulator  42.19 
 
 
127 aa  80.9  0.000000000000009  Caulobacter sp. K31  Bacteria  normal  0.309245  normal  0.121494 
 
 
-
 
NC_008042  TM1040_3777  XRE family transcriptional regulator  47.89 
 
 
125 aa  80.9  0.00000000000001  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_7198  transcriptional regulator, XRE family  35.17 
 
 
134 aa  80.5  0.00000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0637638 
 
 
-
 
NC_011991  Avi_9533  transcriptional regulator Cro/CI family  36.3 
 
 
141 aa  77.8  0.00000000000007  Agrobacterium vitis S4  Bacteria  normal  0.140693  n/a   
 
 
-
 
NC_010338  Caul_3790  XRE family transcriptional regulator  37.4 
 
 
129 aa  77  0.0000000000001  Caulobacter sp. K31  Bacteria  normal  hitchhiker  0.0000021488 
 
 
-
 
NC_008347  Mmar10_2935  XRE family transcriptional regulator  41.18 
 
 
128 aa  76.3  0.0000000000002  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0154  helix-turn-helix domain-containing protein  51.35 
 
 
134 aa  75.9  0.0000000000003  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2806  putative transcriptional regulatory protein  43.01 
 
 
131 aa  75.1  0.0000000000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_4413  transcriptional regulator, XRE family  51.47 
 
 
121 aa  74.7  0.0000000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.465238  normal 
 
 
-
 
NC_010725  Mpop_3762  transcriptional regulator, XRE family  48.19 
 
 
135 aa  74.7  0.0000000000007  Methylobacterium populi BJ001  Bacteria  normal  0.117326  normal 
 
 
-
 
NC_011369  Rleg2_4093  transcriptional regulator, XRE family  51.47 
 
 
121 aa  74.3  0.0000000000008  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4834  transcriptional regulator, XRE family  53.85 
 
 
135 aa  73.9  0.000000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.592449  normal 
 
 
-
 
NC_010172  Mext_0155  helix-turn-helix domain-containing protein  36.62 
 
 
135 aa  73.6  0.000000000001  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3125  XRE family transcriptional regulator  52.94 
 
 
162 aa  73.2  0.000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.412901  normal 
 
 
-
 
NC_010511  M446_2456  XRE family transcriptional regulator  56.06 
 
 
134 aa  73.2  0.000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.214066  normal  0.20041 
 
 
-
 
NC_010505  Mrad2831_2429  XRE family transcriptional regulator  35.67 
 
 
143 aa  72.4  0.000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.214939  normal 
 
 
-
 
NC_010505  Mrad2831_0066  XRE family transcriptional regulator  50 
 
 
146 aa  72  0.000000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0319384  normal 
 
 
-
 
NC_009621  Smed_6073  XRE family transcriptional regulator  43.04 
 
 
148 aa  71.6  0.000000000006  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1168  transcriptional regulator, XRE family  52.86 
 
 
142 aa  71.2  0.000000000007  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.092853  normal 
 
 
-
 
NC_010172  Mext_1041  helix-turn-helix domain-containing protein  52.86 
 
 
142 aa  71.2  0.000000000007  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0368815 
 
 
-
 
NC_010725  Mpop_1563  transcriptional regulator, XRE family  52.78 
 
 
135 aa  71.2  0.000000000007  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2160  transcriptional regulator, XRE family  54.55 
 
 
134 aa  71.2  0.000000000008  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.468793  n/a   
 
 
-
 
NC_011894  Mnod_6290  transcriptional regulator, XRE family  50.68 
 
 
121 aa  70.9  0.00000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3522  helix-turn-helix domain-containing protein  47.44 
 
 
135 aa  70.1  0.00000000001  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0971  transcriptional regulator, XRE family  52.86 
 
 
135 aa  70.9  0.00000000001  Methylobacterium populi BJ001  Bacteria  normal  0.508784  normal 
 
 
-
 
NC_008347  Mmar10_1502  XRE family transcriptional regulator  47.89 
 
 
136 aa  69.3  0.00000000003  Maricaulis maris MCS10  Bacteria  normal  0.662366  normal 
 
 
-
 
NC_007798  NSE_0230  DNA-binding protein  35.16 
 
 
144 aa  68.6  0.00000000004  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  0.0592162  n/a   
 
 
-
 
NC_010725  Mpop_2727  transcriptional regulator, XRE family  46.84 
 
 
133 aa  68.9  0.00000000004  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_2958  transcriptional regulator HTH family  46.38 
 
 
134 aa  67.8  0.00000000009  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_3608  XRE family transcriptional regulator  39.18 
 
 
130 aa  62  0.000000004  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0591  XRE family transcriptional regulator  39.06 
 
 
113 aa  58.9  0.00000003  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_6134  XRE family transcriptional regulator  37.88 
 
 
139 aa  57.4  0.0000001  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.577442 
 
 
-
 
NC_012918  GM21_1458  transcriptional regulator, XRE family  45.16 
 
 
114 aa  56.6  0.0000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010510  Mrad2831_6062  XRE family transcriptional regulator  40.3 
 
 
138 aa  55.5  0.0000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1922  transcriptional regulator, XRE family  39.13 
 
 
128 aa  54.7  0.0000008  Dickeya zeae Ech1591  Bacteria  normal  0.243972  n/a   
 
 
-
 
NC_010505  Mrad2831_4492  XRE family transcriptional regulator  36.23 
 
 
135 aa  53.5  0.000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1916  transcriptional regulator, XRE family  38.04 
 
 
128 aa  51.6  0.000005  Dickeya zeae Ech1591  Bacteria  normal  0.0812721  n/a   
 
 
-
 
NC_008686  Pden_2415  XRE family transcriptional regulator  51.22 
 
 
108 aa  51.6  0.000006  Paracoccus denitrificans PD1222  Bacteria  normal  0.747648  normal  0.205429 
 
 
-
 
NC_011894  Mnod_5909  transcriptional regulator, XRE family  36.14 
 
 
149 aa  50.8  0.000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.27764  n/a   
 
 
-
 
NC_012034  Athe_2467  transcriptional regulator, XRE family  33.8 
 
 
122 aa  50.4  0.00001  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000461389  n/a   
 
 
-
 
NC_009467  Acry_3148  XRE family transcriptional regulator  33.33 
 
 
185 aa  50.8  0.00001  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009467  Acry_3193  XRE family transcriptional regulator  33.33 
 
 
185 aa  50.8  0.00001  Acidiphilium cryptum JF-5  Bacteria  normal  0.324962  n/a   
 
 
-
 
NC_011757  Mchl_3628  transcriptional regulator, XRE family  36.99 
 
 
135 aa  49.7  0.00002  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.422451  normal  0.286276 
 
 
-
 
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