72 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
SaurJH1_0407  CDS  NC_009632  431499  431702  204  helix-turn-helix domain-containing protein  YP_001315556  decreased coverage  9.7753e-05  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_0475  CDS  NC_009632  495748  496533  786  putative lipoprotein  YP_001315620  decreased coverage  0.000163585  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_0542  CDS  NC_009632  572932  573324  393  septum formation initiator  YP_001315687  decreased coverage  1.65616e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_0577  CDS  NC_009632  618653  619021  369  50S ribosomal protein L7/L12  YP_001315722  decreased coverage  1.9471e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_0663  CDS  NC_009632  713448  714944  1497  putative monovalent cation/H+ antiporter subunit D  YP_001315807  decreased coverage  8.0828e-05  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_0673  CDS  NC_009632  724485  725237  753  hypothetical protein  YP_001315817  decreased coverage  9.86698e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_0714    NC_009632  767471  767958  488      decreased coverage  9.5044e-05  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_0787  CDS  NC_009632  840918  841988  1071  diguanylate cyclase  YP_001315930  decreased coverage  0.0010071  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_0788  CDS  NC_009632  842306  843361  1056  glycosyl transferase family protein  YP_001315931  decreased coverage  0.000170837  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_0849  CDS  NC_009632  907174  907554  381  glycine cleavage system protein H  YP_001315992  decreased coverage  2.4227e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_0856  CDS  NC_009632  912064  912885  822  NLPA lipoprotein  YP_001315999  decreased coverage  4.25064e-05  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_0903  CDS  NC_009632  936031  936453  423  RinA family phage transcriptional regulator  YP_001316046  decreased coverage  0.00191613  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1003  CDS  NC_009632  1036415  1036786  372  hypothetical protein  YP_001316146  decreased coverage  0.000244431  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1014  CDS  NC_009632  1048565  1049554  990  tryptophanyl-tRNA synthetase  YP_001316157  decreased coverage  0.00140566  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1016  CDS  NC_009632  1050614  1051333  720  adaptor protein  YP_001316159  decreased coverage  0.000556878  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1022  CDS  NC_009632  1056833  1057180  348  hypothetical protein  YP_001316165  decreased coverage  6.74462e-05  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1023  CDS  NC_009632  1057197  1057832  636  RelA/SpoT domain-containing protein  YP_001316166  decreased coverage  0.000177866  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1026  CDS  NC_009632  1059530  1060915  1386  magnesium transporter  YP_001316169  decreased coverage  0.000394015  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1027  CDS  NC_009632  1060925  1062769  1845  sodium/hydrogen exchanger  YP_001316170  decreased coverage  0.000401836  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1146  CDS  NC_009632  1166120  1166602  483  phosphoribosylaminoimidazole carboxylase, catalytic subunit  YP_001316287  decreased coverage  0.00044398  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1309  CDS  NC_009632  1332238  1332612  375  hypothetical protein  YP_001316449  decreased coverage  0.00108865  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1340  CDS  NC_009632  1368533  1369306  774  transcriptional repressor CodY  YP_001316478  decreased coverage  5.48296e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1369  CDS  NC_009632  1402906  1403484  579  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase  YP_001316507  decreased coverage  0.000137506  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1421  CDS  NC_009632  1454895  1456349  1455  amino acid permease-associated region  YP_001316558  decreased coverage  0.000107039  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1422  CDS  NC_009632  1456553  1458070  1518  catalase  YP_001316559  decreased coverage  0.000148509  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1425  CDS  NC_009632  1459190  1460167  978  guanosine 5'-monophosphate oxidoreductase  YP_001316562  decreased coverage  8.80061e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1472  CDS  NC_009632  1511152  1512138  987  binding-protein-dependent transport systems inner membrane component  YP_001316609  decreased coverage  0.000559145  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1491  CDS  NC_009632  1532688  1533089  402  hypothetical protein  YP_001316627  decreased coverage  6.69819e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1547  CDS  NC_009632  1623950  1624267  318  hypothetical protein  YP_001316683  decreased coverage  0.000244431  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1612  CDS  NC_009632  1686719  1687171  453  arginine repressor  YP_001316747  decreased coverage  1.4765e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1613  CDS  NC_009632  1687603  1688484  882  polyprenyl synthetase  YP_001316748  decreased coverage  8.80061e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
-
 
SaurJH1_1614  CDS  NC_009632  1688462  1688692  231  exodeoxyribonuclease VII small subunit  YP_001316749  decreased coverage  6.44175e-07  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
-
 
SaurJH1_1616  CDS  NC_009632  1690039  1690428  390  transcription antitermination protein NusB  YP_001316751  decreased coverage  1.03725e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
-
 
SaurJH1_1617  CDS  NC_009632  1690488  1690850  363  hypothetical protein  YP_001316752  decreased coverage  1.17464e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
-
 
SaurJH1_1654  CDS  NC_009632  1721365  1723182  1818  DNA primase  YP_001316789  decreased coverage  0.000285307  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
-
 
SaurJH1_1680  CDS  NC_009632  1746991  1749171  2181  DNA internalization-related competence protein ComEC/Rec2  YP_001316815  decreased coverage  0.00317004  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1681  CDS  NC_009632  1749197  1749628  432  ComE operon protein 2  YP_001316816  decreased coverage  0.000220754  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1718  CDS  NC_009632  1782782  1784056  1275  recombination factor protein RarA  YP_001316851  decreased coverage  7.35591e-05  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1721  CDS  NC_009632  1787233  1788495  1263  histidyl-tRNA synthetase  YP_001316854  decreased coverage  2.99078e-05  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1735  CDS  NC_009632  1804713  1804997  285  50S ribosomal protein L27  YP_001316868  decreased coverage  1.5343e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1736  CDS  NC_009632  1805009  1805329  321  hypothetical protein  YP_001316869  decreased coverage  2.28568e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1770  CDS  NC_009632  1835346  1835702  357  50S ribosomal protein L20  YP_001316901  decreased coverage  1.04745e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1771  CDS  NC_009632  1835749  1835949  201  50S ribosomal protein L35  YP_001316902  decreased coverage  6.08449e-07  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1823  CDS  NC_009632  1903505  1905211  1707  acetyl-CoA synthetase  YP_001316954  decreased coverage  0.000207861  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1825  CDS  NC_009632  1906037  1907206  1170  histone deacetylase superfamily protein  YP_001316956  decreased coverage  1.97961e-05  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1826  CDS  NC_009632  1907304  1908293  990  catabolite control protein A  YP_001316957  decreased coverage  9.2301e-05  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1851  CDS  NC_009632  1944121  1944684  564  hypothetical protein  YP_001316982  decreased coverage  0.002601  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1852  CDS  NC_009632  1944807  1945307  501  accessory regulator A-like protein  YP_001316983  decreased coverage  0.00201547  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1889  CDS  NC_009632  1977605  1978177  573  hypothetical protein  YP_001317018  decreased coverage  0.00731314  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1906    NC_009632  1994184  1994639  456      decreased coverage  1.08888e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_1907  CDS  NC_009632  1994652  1995440  789  hypothetical protein  YP_001317030  decreased coverage  6.43427e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2037  CDS  NC_009632  2132598  2133089  492  staphylokinase precursor  YP_001317154  decreased coverage  0.000113474  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2038  CDS  NC_009632  2133280  2134035  756  CHAP domain-containing protein  YP_001317155  decreased coverage  0.000312263  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2040  CDS  NC_009632  2134513  2134698  186  hypothetical protein  YP_001317157  decreased coverage  0.000173882  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2090  CDS  NC_009632  2166726  2166968  243  hypothetical protein  YP_001317207  decreased coverage  8.16915e-07  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2105  CDS  NC_009632  2180702  2181445  744  hypothetical protein  YP_001317222  decreased coverage  0.00255983  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2107  CDS  NC_009632  2182926  2183552  627  hypothetical protein  YP_001317224  decreased coverage  0.00257983  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2120  CDS  NC_009632  2195641  2196276  636  redox-sensing transcriptional repressor Rex  YP_001317236  decreased coverage  0.00014689  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2165  CDS  NC_009632  2252405  2253277  873  60 kDa inner membrane insertion protein  YP_001317281  decreased coverage  0.001129  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2195  CDS  NC_009632  2277032  2278348  1317  transcription termination factor Rho  YP_001317311  decreased coverage  0.00569958  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2238  CDS  NC_009632  2339490  2340833  1344  major facilitator transporter  YP_001317353  decreased coverage  3.74432e-05  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2285  CDS  NC_009632  2389500  2389892  393  30S ribosomal protein S9  YP_001317397  decreased coverage  0.000447741  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2332  CDS  NC_009632  2423650  2424090  441  regulatory protein MarR  YP_001317444  decreased coverage  1.30332e-05  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2476  CDS  NC_009632  2564318  2564500  183  hypothetical protein  YP_001317587  decreased coverage  5.07866e-07  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2515  CDS  NC_009632  2603132  2604961  1830  hypothetical protein  YP_001317626  decreased coverage  0.000264968  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2533  CDS  NC_009632  2624088  2624345  258  prevent-host-death family protein  YP_001317644  decreased coverage  8.98748e-07  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2539  CDS  NC_009632  2629415  2630164  750  ABC transporter related  YP_001317650  decreased coverage  2.92803e-06  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2546  CDS  NC_009632  2636647  2637468  822  hypothetical protein  YP_001317657  decreased coverage  0.00146073  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2599  CDS  NC_009632  2695650  2696642  993  D-lactate dehydrogenase  YP_001317709  decreased coverage  1.08453e-05  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_2768  CDS  NC_009632  2882617  2883132  516  hypothetical protein  YP_001317877  decreased coverage  1.57098e-05  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_R0071  tRNA  NC_009632  2220516  2220589  74  tRNA-Gly    decreased coverage  2.2788e-07  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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SaurJH1_R0072  tRNA  NC_009632  2220608  2220693  86  tRNA-Leu    decreased coverage  2.17176e-07  n/a    Staphylococcus aureus subsp. aureus JH1  Bacteria 
 
 
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