13 homologs were found in PanDaTox collection
for query gene Rpal_1985 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011004  Rpal_1985  Tripartite ATP-independent periplasmic transporter DctQ component  100 
 
 		 190 aa  383  1e-106  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.399446  n/a   
 
 
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NC_007778  RPB_3581  TRAP dicarboxylate family transporter DctQ subunit  80.43 
 
 		 189 aa  309  2e-83  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.120182  normal  0.15942 
 
 
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NC_012791  Vapar_3914  TrapT family, DctQ subunit C4-dicarboxylate transport  69.57 
 
 		 174 aa  235  3e-61  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_7097  TrapT family, dctQ subunit C4-dicarboxylate transport  66.46 
 
 		 169 aa  229  1e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.108267  normal  1 
 
 
-
 
NC_011883  Ddes_1524  Tripartite ATP-independent periplasmic transporter DctQ component  26.79 
 
 		 186 aa  47.4  0.0001  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0215474  n/a   
 
 
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NC_007963  Csal_3138  tripartite ATP-independent periplasmic transporter DctQ  23.7 
 
 		 223 aa  46.2  0.0003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.428126  n/a   
 
 
-
 
NC_007908  Rfer_4195  tripartite ATP-independent periplasmic transporter DctQ  25.86 
 
 		 176 aa  45.1  0.0006  Rhodoferax ferrireducens T118  Bacteria  normal  0.293358  n/a   
 
 
-
 
NC_008825  Mpe_A3654  TRAP transporter DctQ family protein  27.34 
 
 		 170 aa  45.1  0.0006  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  0.724435 
 
 
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NC_008228  Patl_2293  tripartite ATP-independent periplasmic transporter DctQ  27.18 
 
 		 176 aa  43.5  0.002  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
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NC_008346  Swol_0330  tripartite ATP-independent periplasmic transporters, DctQ component, putative  27.07 
 
 		 163 aa  43.1  0.002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.0000018584  n/a   
 
 
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NC_008576  Mmc1_2138  tripartite ATP-independent periplasmic transporter DctQ  26.87 
 
 		 180 aa  43.5  0.002  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000455407  normal  0.80837 
 
 
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NC_003910  CPS_0130  C4-dicarboxylate transporter family protein, DctQ subunit  24.74 
 
 		 173 aa  42  0.006  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
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NC_008687  Pden_3428  tripartite ATP-independent periplasmic transporter DctQ  24.69 
 
 		 180 aa  41.2  0.009  Paracoccus denitrificans PD1222  Bacteria  normal  0.21898  normal  1 
 
 
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