Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1985 |
Symbol | |
ID | 6409645 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 2146259 |
End bp | 2146831 |
Gene Length | 573 bp |
Protein Length | 190 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642711871 |
Product | Tripartite ATP-independent periplasmic transporter DctQ component |
Protein accession | YP_001990983 |
Protein GI | 192290378 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.399446 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTCTC CTCCCGACGA CAAGCTTCGC GACCGGCTGC CTGGCGCCCT GACGACGCGG CGCTTCTCCA AGAACGGCAT GGACCGCTTC ATCGACGCGA TCGAATGGAT CGCGGCGTTC TTCGTCGGCA TCGTCGCGCT GAACACGTTT CTCGCCGTGT TCATGCGCAA GTTCTTTTCG GTGACGATCC CGGACTACTA CAATTTCGGC CAGTTCATGC TCGGCGTGCT GATCTTCTGG GGTATCGCCG CCACCAGCTA TCGCGGTTCG CACATCACCG TGGATCTGGT GTGGGCGGCG GCGTCGCCGC GCTGGCAGCG GATCATCGAC ATCTTCGCCA CCCTAGTGCT GCTGTTCGTC GTCAGCGTGC AGACCTACAC GCTGTTCGAC AAGGTGGTGA CCACCAAGGC CGACCACATC GTCACCATGG ATCTGCAGAT CCCGATCTGG CCGTTCTATC TGGTGTCGTG GATCGGAGAC GTCTCCGCCG TGCTGCTGAT CGCGATTCGA ACCTTCCGGC TGATCTTCCA TCCGGAGCAG ATGCGCGAAG TGCGCATGAA GCCGGTGGAG TAG
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Protein sequence | MSSPPDDKLR DRLPGALTTR RFSKNGMDRF IDAIEWIAAF FVGIVALNTF LAVFMRKFFS VTIPDYYNFG QFMLGVLIFW GIAATSYRGS HITVDLVWAA ASPRWQRIID IFATLVLLFV VSVQTYTLFD KVVTTKADHI VTMDLQIPIW PFYLVSWIGD VSAVLLIAIR TFRLIFHPEQ MREVRMKPVE
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