14 homologs were found in PanDaTox collection
for query gene Rcas_1980 on replicon NC_009767
Organism: Roseiflexus castenholzii DSM 13941



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009767  Rcas_1980  CRISPR-associated RAMP Csm4 family protein  100 
 
 		 380 aa  764    Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.390104  normal  0.234519 
 
 
-
 
NC_011831  Cagg_3446  CRISPR-associated RAMP protein, Csm4 family  52.09 
 
 		 363 aa  329  6e-89  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  0.180108 
 
 
-
 
NC_009972  Haur_2478  CRISPR-associated RAMP Csm4 family protein  37.03 
 
 		 341 aa  152  1e-35  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_013501  Rmar_1634  CRISPR-associated RAMP protein, Csm4 family  29.78 
 
 		 330 aa  101  2e-20  Rhodothermus marinus DSM 4252  Bacteria  hitchhiker  0.0000314588  n/a   
 
 
-
 
NC_009616  Tmel_1673  CRISPR-associated RAMP Csm4 family protein  29.06 
 
 		 313 aa  65.9  0.000000001  Thermosipho melanesiensis BI429  Bacteria  normal  0.527021  n/a   
 
 
-
 
NC_011060  Ppha_2451  CRISPR-associated RAMP protein, Csm4 family  24.54 
 
 		 354 aa  64.7  0.000000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_2701  CRISPR-associated RAMP protein, Csm4 family  22.16 
 
 		 334 aa  58.9  0.0000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_002976  SERP2458  CRISPR-associated Csm4 family protein  23.79 
 
 		 304 aa  54.7  0.000002  Staphylococcus epidermidis RP62A  Bacteria  normal  0.044153  n/a   
 
 
-
 
NC_008346  Swol_1753  hypothetical protein  22.87 
 
 		 315 aa  54.7  0.000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  1  n/a   
 
 
-
 
NC_008639  Cpha266_2047  CRISPR-associated RAMP Csm4 family protein  24.61 
 
 		 354 aa  53.9  0.000004  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  1  n/a   
 
 
-
 
NC_009635  Maeo_1080  CRISPR-associated RAMP Csm4 family protein  19.35 
 
 		 383 aa  53.5  0.000006  Methanococcus aeolicus Nankai-3  Archaea  normal  0.212277  n/a   
 
 
-
 
NC_011661  Dtur_0609  CRISPR-associated RAMP protein, Csm4 family  23.82 
 
 		 338 aa  50.8  0.00004  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_008532  STER_0976  hypothetical protein  24.88 
 
 		 299 aa  43.9  0.004  Streptococcus thermophilus LMD-9  Bacteria  normal  0.0564527  n/a   
 
 
-
 
NC_013926  Aboo_1025  CRISPR-associated RAMP protein, Csm4 family  28.97 
 
 		 280 aa  44.3  0.004  Aciduliprofundum boonei T469  Archaea  hitchhiker  0.00000398151  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>